View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4427_high_20 (Length: 286)
Name: NF4427_high_20
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4427_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 15 - 275
Target Start/End: Original strand, 2788628 - 2788887
Alignment:
| Q |
15 |
acatataactgtataaatttaaaaaatctataacgaagttcaacaatttttaaatgaattcgaatcgacacactgatgatctgaacaaatcaagagagaa |
114 |
Q |
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| T |
2788628 |
acatataactgtataaatttaaaaaatctataacgaagttcaacaatttttaaatgaattcgaatcgacacactgatgatctgaacaaatcaagagagaa |
2788727 |
T |
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| Q |
115 |
gatagaatgaaaaccattcatgttgtggtagtgagtgcacacaaatgaactgactgataaaaacaaacgacattaaaatgtatttttaattaagataacg |
214 |
Q |
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| T |
2788728 |
gatagaatgaaaaccattcatgttgtggtcgtgagtgc-cacaaatgaactgactgataaaaacaaacgacattaaaatgtatttttaattaagataaca |
2788826 |
T |
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| Q |
215 |
ctgattaaaataagaaagaattatacactatgctcagacgctacttgagatagaatctgaa |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2788827 |
ctgattaaaataagaaagaattatacactatgctcagacgctacttgagatagaatctgaa |
2788887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 22365357 - 22365504
Alignment:
| Q |
15 |
acatataactgtataaatttaaaaaatctataacgaagttcaacaatttttaaatgaattcgaatcgacacactgatgatctgaacaaatcaagagagaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
22365357 |
acatataactgtataaatttaaaaaatctataacgatgttcaacaatttttcaatgaattcaaatcgacaaactgatgatctgaacaaatcaagagagaa |
22365456 |
T |
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| Q |
115 |
gatagaatgaaaaccattcatgt--tgtggtagtgagtgcacacaaat |
160 |
Q |
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||||||||||||| |||| |||| ||||||||||||||||||||||| |
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| T |
22365457 |
gatagaatgaaaatcatttatgttgtgtggtagtgagtgcacacaaat |
22365504 |
T |
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