View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4427_high_21 (Length: 265)
Name: NF4427_high_21
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4427_high_21 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 2789337 - 2789082
Alignment:
| Q |
11 |
cagagagtgcagcatccgataaagaatcaaggaatttgacaagttcggagatgaggttttcagactcgagagaaagttgaagttcagtcaactatcaagc |
110 |
Q |
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| T |
2789337 |
cagagagtgcagcatccggtaaagaatcaaggaatttgacaagttcggagatgaggttttcagactcgagagaaagttgaagttcagtcaactatcaagc |
2789238 |
T |
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| Q |
111 |
atataaaaccatgattgttattaacaagttaataacctttcaataaaatataaaaaagacaaacatgcatccatttttatccttttaactactt-ttttc |
209 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2789237 |
atataaaaccatgattgttaacaacaagttaataacctttcaataaaatataaaaaagacaaacatgcatccatttttatccttttaactactttttttc |
2789138 |
T |
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| Q |
210 |
ttgctacatagcctctattttgcaaggtaaaattgttaacttatagcagatagctt |
265 |
Q |
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| T |
2789137 |
ttgctacatagcctctattttgcaaggtaaaactgttaacttatagcagatagctt |
2789082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 2417141 - 2417395
Alignment:
| Q |
11 |
cagagagtgcagcatccgataaagaatcaaggaatttgacaagttcggagatgaggttttcagactcgagagaaagttgaagttcagtcaactatcaagc |
110 |
Q |
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||||||| |||||| ||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
2417141 |
cagagagagcagcaaccgatgaagaatcaaggaatttgacaagctctgagatgaggttttcagactcgagagaaagttgaagttcagtaaactacgaagc |
2417240 |
T |
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| Q |
111 |
atataaaaccatgattgttattaacaagttaataacctttcaataaaatataaaaaagacaaacatgcatccatttttatccttttaactacttttttct |
210 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
2417241 |
atataaaaccatgattgttaacagcaagttaataacctttcaataaaatataaaaaagacaaacatgcatccatttttatcctttcaacttcttttttct |
2417340 |
T |
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| Q |
211 |
tgctacatagcctctattttgcaaggtaaaattgttaacttatagcagatagctt |
265 |
Q |
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| T |
2417341 |
tgctacatagcctttatttcgctaggtaaaactgttaactaatagcatatagctt |
2417395 |
T |
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