View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4427_high_4 (Length: 473)
Name: NF4427_high_4
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4427_high_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 3 - 473
Target Start/End: Original strand, 41034699 - 41035169
Alignment:
| Q |
3 |
aggaggagcagagacaaatgatcattttactgatcagagaagcaacaaaaggttcacggagccaaccatatcaagcaatgctggattagttgcagcattg |
102 |
Q |
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| T |
41034699 |
aggaggaccagacacaaatgatcattttactgatcagaggagcaacaaaaggttcacggagccaaccatatcaagcaatgctggattagtttcagcattg |
41034798 |
T |
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| Q |
103 |
attgcacttcaagacccttctaataattcacatgacttgaaaaactcattgtgggaatggatttgatttattattgaaagtcttgcatcaaatttctctt |
202 |
Q |
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| T |
41034799 |
attgcacttcaagacccttctaataattcacatgacttgaaaaactcattgtgggaatggatttgatttattattgaaagtcttgcatcaaatttctctt |
41034898 |
T |
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| Q |
203 |
agtggaacagaattgtgaggatatgtgtaggaaaaaagggaagtgtgacaactataattatagcaaatatatttcattggctcatatcatcaacaatttg |
302 |
Q |
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| T |
41034899 |
agtggaacagaattgtgaggatatgtgtaggaaaaaagggaagtgtgacaactataattatagcagatatatttcattggctcatatgatcaacaatttg |
41034998 |
T |
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| Q |
303 |
atggatttaatttttaaatggtacttttcatgtcatcaattgtaaagttcagttatttcaggattttgatgcaatgaaggcatgattgttcaatgaacac |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41034999 |
atggatttaatttttaaatggtacttttcatgtcatcaattgtaaagttcagttatttcaggattttgatgcaatgaaggcatgattgttcaatgaacac |
41035098 |
T |
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| Q |
403 |
cataaattactcaactctaagaaccaagcagttgcgctctacttaaactgtactataaatcactcttgaat |
473 |
Q |
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| T |
41035099 |
cataaattactcaactctaagaaccaagcagttgggctctacttaaactgtactataaatcactcttgaat |
41035169 |
T |
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