View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4427_high_5 (Length: 453)
Name: NF4427_high_5
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4427_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 6 - 438
Target Start/End: Original strand, 6262244 - 6262676
Alignment:
| Q |
6 |
aggtcaaaaatttggggacacataatgggaaacagaaatttgaatccaaattatgttgttcctcggtggataccacaatttgaatgcagaagtgaagcta |
105 |
Q |
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| T |
6262244 |
aggtcaaaaatttggggacacataatgggaaacagaaatttgaatccaaattatgttgttcctcggtggataccacaatttgaatgcagaagtgaagcta |
6262343 |
T |
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| Q |
106 |
gaaccttggttgttctagatgatgtttggtcacaagcagttcttgaacagcttgtgtgtagaataccaggttgcaagtttgttgttgtttccaggttcca |
205 |
Q |
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| T |
6262344 |
gaaccttggttgttctagatgatgtttggtcacaagcagttcttgaacagcttgtgtgtagaataccaggttgcaagtttgttgttgtttccaggttcca |
6262443 |
T |
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| Q |
206 |
attcccaacaatattctctgcaacttataaggttgaattgctcagtgaagaggatgctctgtcattattctgtcaccatgcttttggacagaaatcaatc |
305 |
Q |
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| T |
6262444 |
attcccaacaatattctctgcaacttataaggttgaattgctcagtgaagaggatgctctgtcattattctgtcaccatgcttttggacagaaatcaatc |
6262543 |
T |
|
| Q |
306 |
cctttaacagctaatgagaatttggtcaaacaggtaatggaacttattcccagcacattgattaagtagtttacatttgtttggataaacagcttaatta |
405 |
Q |
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| T |
6262544 |
cctttaacagctaatgagaatttggtcaaacaggtaatggaacttattcccagcacatcgattaagtaggttacatttgtttggataaacagcttaatta |
6262643 |
T |
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| Q |
406 |
atcgcatacaacataatttcttatcatgtaagt |
438 |
Q |
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| T |
6262644 |
agcgcatacaacataatttcttatcatgtaagt |
6262676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 224 - 345
Target Start/End: Original strand, 6271562 - 6271683
Alignment:
| Q |
224 |
tgcaacttataaggttgaattgctcagtgaagaggatgctctgtcattattctgtcaccatgcttttggacagaaatcaatccctttaacagctaatgag |
323 |
Q |
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|||||||||||| ||||||||| | |||| ||||| ||||| || ||||||||||| ||||| |||||||||||||| ||||| |||||||| || |
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| T |
6271562 |
tgcaacttataaagttgaattgttggacaaagatgatgcactgtctttgttctgtcaccacgctttcggacagaaatcaattcctttcgcagctaatcag |
6271661 |
T |
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| Q |
324 |
aatttggtcaaacaggtaatgg |
345 |
Q |
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||||| |||||||||||||||| |
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| T |
6271662 |
aatttagtcaaacaggtaatgg |
6271683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 6271348 - 6271407
Alignment:
| Q |
10 |
caaaaatttggggacacataatgggaaacagaaatttgaatccaaattatgttgttcctc |
69 |
Q |
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|||| ||||||||||||||||||||||| ||| ||| ||| | |||||||||||||||| |
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| T |
6271348 |
caaagatttggggacacataatgggaaatggaagtttcaataccaattatgttgttcctc |
6271407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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