View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4427_low_1 (Length: 514)
Name: NF4427_low_1
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4427_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 9 - 496
Target Start/End: Original strand, 4244215 - 4244702
Alignment:
| Q |
9 |
agcacagaccaaaagaataagaattgttacatccttaaaagcttcaacaacaaaatgaaagaaacttttagaaggtggttttttgtaagtgttggaacca |
108 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4244215 |
agcacaaaccaaaagaataagaattgttacatccttaaaagcttcaacaacaaaatgaaagaaacttttagaaggtggttttttgtaagtgttggaacca |
4244314 |
T |
|
| Q |
109 |
aacacttgttgtctaattgaaatgtcatgaaaatcatcatcatgacttttgataccaaactcaacgttggttttaagtgatgaagcaacaccttcaactc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4244315 |
aacacttgttgtctaattgaaatgtcatgaaaatcatcatcatgacttctgataccaaactcaacgttggttttaagtgatgaagcaacaccttcaactc |
4244414 |
T |
|
| Q |
209 |
caccatgtttctgaagtgtatcaatgcttttctctttgacaatatctatgagagtttcttgatcaatggtaaaagagtgaggtgaacttaaatcaaccac |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4244415 |
caccatgtttctgaagtgtatcaatgcttttctctttgacaatatctatgagagtttcttgatcaatggtaaaagagtgaggtgaacttaaatcaaccac |
4244514 |
T |
|
| Q |
309 |
ggtgaaagatggggtaggtgtgatttttgtttttctggtagaatataacatgaaagccctagaacaatagattttcatgaaggcgttgtgccatcttata |
408 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4244515 |
ggtgaaagatggggtaggagtgatttttgtttttttggtagaatatgacatgaaagccctagaacaatagattttcatgaaggcgttgtgccatcttata |
4244614 |
T |
|
| Q |
409 |
ttgtttgggctgttggtgtttggtgcattgagaagtgtctcaatgtggttcaagtttgtgaacaagggcattgacatggtttcaatat |
496 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4244615 |
ttgtttgggctgttggtgtttggtgcattgagaagtgtctcaatgtggttcaagtttgtgaacaagggcattgacatggtttcgatat |
4244702 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 493
Target Start/End: Original strand, 6187271 - 6187761
Alignment:
| Q |
9 |
agcacagaccaaaagaataagaattgttacatccttaaaagcttcaacaacaaaatgaaagaaacttttagaaggtggttttttgtaagtgttggaacca |
108 |
Q |
| |
|
|||||| |||||||| || |||||||| ||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
6187271 |
agcacaaaccaaaaggattagaattgtaacatccttaaaagcttcaataacaaaatgaatgaaactcttagaaggtggttttttgtaagtgttggaacca |
6187370 |
T |
|
| Q |
109 |
aacacttgttgtctaattgaaatgtcatgaaaatcatca---tcatgacttttgataccaaactcaacgttggttttaagtgatgaagcaacaccttcaa |
205 |
Q |
| |
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|||||||||| ||||||| ||| || | |||||||| | |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
6187371 |
aacacttgtttcctaattgcaatatcttcaaaatcattagtatcatcacttttgataccaaactcaatgttggttttaagtgatgaagcaacaccttcaa |
6187470 |
T |
|
| Q |
206 |
ctccaccatgtttctgaagtgtatcaatgcttttctctttgacaatatctatgagagtttcttgatcaatggtaaaagagtgaggtgaacttaaatcaac |
305 |
Q |
| |
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|||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||| |
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| T |
6187471 |
ctccaccatgattttgaagtgtatcaatgtttttctctttgacaatatctatgagagtttcttgatcaatggtaaaagagtgtggtaaatttaaatcaac |
6187570 |
T |
|
| Q |
306 |
cacggtgaaagatggggtaggtgtgatttttgtttttctggtagaatataacatgaaagccctagaacaatagattttcatgaaggcgttgtgccatctt |
405 |
Q |
| |
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||||||||||||||| |||||||||||||||| ||| ||||| ||| | |||||||||||||||| ||||| ||||||||||| || |||||||||||| |
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|
| T |
6187571 |
cacggtgaaagatggagtaggtgtgatttttggtttcttggtaaaatgtgacatgaaagccctagagcaatatattttcatgaaagcattgtgccatctt |
6187670 |
T |
|
| Q |
406 |
atattgtttgggctgttggtg---tttggtgcattgagaagtgtctcaatgtggttcaagtttgtgaacaagggcattgacatggtttcaa |
493 |
Q |
| |
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| ||| || ||| |||||| ||||||||||| |||||||||||||||| ||||| ||||||||| || | |||||||||||||||| |
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|
| T |
6187671 |
ttgctgtgtgtgctattggtgttttttggtgcattaagaagtgtctcaatgtcgttcatgtttgtgaaaaatgtgattgacatggtttcaa |
6187761 |
T |
|
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