View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4427_low_10 (Length: 415)
Name: NF4427_low_10
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4427_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 8 - 399
Target Start/End: Original strand, 23801679 - 23802070
Alignment:
| Q |
8 |
acatcatcaatagtccatgactcttccaacctagtaatagcaggtccatccttaagattatcaccaaaccttgttatcatcacagttgttgatccagcat |
107 |
Q |
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| T |
23801679 |
acatcatcaatagtccatgactcttccaacctagtaatagcaggtccatccttaagattatcaccaaaccttgttatcatcacagttgttgatccagcat |
23801778 |
T |
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| Q |
108 |
gtgcaatcataacaccatcaacatctctataatcttcaatttttgttgacattgttgtttcccaatatgtagggtttgtccctattgcttgaatccttgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23801779 |
gtgcaatcataacaccatcaacatctctataatcttcaatttttgttgacattgttgtttcccaatatgtagggtttgtccctattgcttgaatccttgt |
23801878 |
T |
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| Q |
208 |
caaataagagtcctctaagtgcactaaaagtccacttctttgactaaaataaccaaatatggcatgctttatcatctcggccgtgttatcgcttcgttcg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23801879 |
caaataagagtcctctaagtgcactaaaagtccacttctttgactaaaataaccaaatatagcatgctttatcatctcggccgtgttatcgcttcgttcg |
23801978 |
T |
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| Q |
308 |
attaggtccttttgatcggctgagagttttaatacgaaacaatctacgccgttgatttgtttctcccccatgtgttgagctgcactgaatac |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23801979 |
attaggtccttttgatcggctgagagttttaatacgaaacaatctacgccgttgatttgtttctcccccatgtgttgagctgcactgaatac |
23802070 |
T |
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