View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4427_low_11 (Length: 399)
Name: NF4427_low_11
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4427_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 22 - 391
Target Start/End: Original strand, 26721783 - 26722147
Alignment:
| Q |
22 |
atgtaagaggcttatcactctctgttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnnnnnatctcattctcttcttactt |
121 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |
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| T |
26721783 |
atgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaaaaacaaactcactttttttt-----atctcattctcttcttactt |
26721877 |
T |
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| Q |
122 |
ttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaatcatgagcctt |
221 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
26721878 |
ttaatttcattttattctgtaataatgataacgagattgtttctatctacactttataggttctacaaatatggttcaaagaagaaaaaccatgagcctt |
26721977 |
T |
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| Q |
222 |
ggattatgatttgaggttgtaatttgagaaaatggttcaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaat |
321 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26721978 |
ggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaat |
26722077 |
T |
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| Q |
322 |
tctcataatcacgaaaccaaaaggcatcattccttctccaattaattttttcttctcactcagaataatc |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26722078 |
tctcataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactcagaataatc |
26722147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 22 - 391
Target Start/End: Complemental strand, 45117126 - 45116775
Alignment:
| Q |
22 |
atgtaagaggcttatcactctctgttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnnnnnatctcattctcttcttactt |
121 |
Q |
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|||||||||||| |||||||||| || ||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
45117126 |
atgtaagaggctcatcactctctttttaagagcatgctcccaaagtgattgggaacatcaaattcactttttttt-----atctcattctcttcttactt |
45117032 |
T |
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| Q |
122 |
ttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaatcatgagcctt |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45117031 |
ttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatgagcctt |
45116932 |
T |
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| Q |
222 |
ggattatgatttgaggttgtaatttgagaaaatggttcaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaat |
321 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45116931 |
ggattatgatttgag-------------aaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaat |
45116845 |
T |
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| Q |
322 |
tctcataatcacgaaaccaaaaggcatcattccttctccaattaattttttcttctcactcagaataatc |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45116844 |
tctcataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactcagaataatc |
45116775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 22 - 391
Target Start/End: Original strand, 2987251 - 2987603
Alignment:
| Q |
22 |
atgtaagaggcttatcactctctgttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnnnnnatctcattctcttcttactt |
121 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
2987251 |
atgtaagaggcttatcactctctttttaagagcatgttcccaaagtgattgggaacatcaaattcacttttttttt----atctcattctcttcttactt |
2987346 |
T |
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| Q |
122 |
ttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaatcatgagcctt |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2987347 |
ttaatttcattttattctgtaataatgataatgagattgtttctatctatactttataggttctgcaaatatggttcaaagaagaaaaaccatgagcctt |
2987446 |
T |
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| Q |
222 |
ggattatgatttgaggttgtaatttgagaaaatggttcaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaat |
321 |
Q |
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|||||||||||| |||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2987447 |
ggattatgattt-------------gagaaaatggtttaatactctatttgttgtgtaatttccatcaatgttctcactactcaaagacaaaactccaat |
2987533 |
T |
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| Q |
322 |
tctcataatcacgaaaccaaaaggcatcattccttctccaattaattttttcttctcactcagaataatc |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2987534 |
tctcataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactcagaataatc |
2987603 |
T |
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