View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4427_low_12 (Length: 375)
Name: NF4427_low_12
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4427_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 242 - 357
Target Start/End: Original strand, 8817823 - 8817938
Alignment:
| Q |
242 |
tccttcatctttgtcttatccacaaactataaactaaagaaacataattgttcagagtagcaagcaagccaatacaattgtcaaagaaaaccaaacacga |
341 |
Q |
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| T |
8817823 |
tccttcatctttgtcttatccacaaactataaactaaacaaacataattgttcagagtagcaagcaagccaatacaattgtcaaagaaaaccaaacacga |
8817922 |
T |
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| Q |
342 |
aatcaaatcaaaccaa |
357 |
Q |
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| T |
8817923 |
aatcaaatcaaaccaa |
8817938 |
T |
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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 8817696 - 8817760
Alignment:
| Q |
150 |
tagcattcatggaagcatgaagattagataaacccatttcaaaacaatttaggggtcaattttat |
214 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8817696 |
tagcattcatggaagcatgaaggttaagtaaacccatttcaaaacaatttaggggtcaattttat |
8817760 |
T |
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