View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4427_low_15 (Length: 348)
Name: NF4427_low_15
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4427_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 25 - 332
Target Start/End: Complemental strand, 21111415 - 21111105
Alignment:
| Q |
25 |
cttttcactgtttttcttgcattgttaaacaattttgcttcttatggtggtccttaacttattgact--tttgttcattatcttgatggaaaaggctata |
122 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21111415 |
cttttcactgtttttcttgcattgttaaacaattttgcttcttatggtggtccttaacttattgactcttttgttcattatcttgatggaaaaggctata |
21111316 |
T |
|
| Q |
123 |
tgagaatcaaagctatgtgttggtttctgcatttttctttgccattgtagagtgctta--acagaggcattagttccttaggttgcagccactcggactt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21111315 |
tgagaatcaaagctatgtgttggtttctgcatttttctttgccattgtagagtgcttaacacagaggcattagttccttaggttgcagccactcggactt |
21111216 |
T |
|
| Q |
221 |
cgaacccaagcactgcttgtgactatgatatataataaagccttaacactttcaggtcaattaagacagtgccatacttatggagaaataatcaatttca |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21111215 |
cgaacccaagcactgcttgtgactatgatatataataaagcctcaacactttcaggt-aattaagacagtgccatacttatggagaaataatcaatttca |
21111117 |
T |
|
| Q |
321 |
tgactgatgatg |
332 |
Q |
| |
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|||||| ||||| |
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| T |
21111116 |
tgactgttgatg |
21111105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 25 - 332
Target Start/End: Complemental strand, 41452998 - 41452683
Alignment:
| Q |
25 |
cttttcactgtttttcttgcattgttaaacaattttgcttcttatggtggtccttaacttattgact--tttgttcattatcttgatggaaaa-ggctat |
121 |
Q |
| |
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||||| |||| |||||||||||| ||||||| |||||||||||||| ||||||||| |||||||||| |||||||| || |||||||||||| |||||| |
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| T |
41452998 |
ctttttactgcttttcttgcattattaaacacttttgcttcttatgttggtccttatcttattgactcttttgttcaataccttgatggaaaaaggctat |
41452899 |
T |
|
| Q |
122 |
atgagaatcaaagctatgtgttggtttctgcatttttctttgcca---ttgtagagtgcttaaca--gaggcattagttccttaggttgcagccactcgg |
216 |
Q |
| |
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| ||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||| |||| |||||||||||| |||||| |
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|
| T |
41452898 |
acgagaatcaaggctatgtgttggtttctgcatttttctttgcaaagcttgtagagtgcttaacacagaggcattggttctttaggttgcagcaactcgg |
41452799 |
T |
|
| Q |
217 |
acttcgaacccaagcactgcttgtgactatgatatataataaagccttaacactttcaggtcaattaagacagtgccatacttatggagaaataatcaat |
316 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
41452798 |
acttcgaacccgagcactgcttgtgactatgatatatagtaaagccttaacactttcaggtcaatcaagacagtgccatacttctggagaaataatcaat |
41452699 |
T |
|
| Q |
317 |
ttcatgactgatgatg |
332 |
Q |
| |
|
|||||||||| ||||| |
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|
| T |
41452698 |
ttcatgactgttgatg |
41452683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 25 - 332
Target Start/End: Complemental strand, 41439829 - 41439514
Alignment:
| Q |
25 |
cttttcactgtttttcttgcattgttaaacaattttgcttcttatggtggtccttaacttattgact--tttgttcattatcttgatggaaaa-ggctat |
121 |
Q |
| |
|
|||||||||| ||||||| ||||||| || | |||||||||||||| ||||||||| |||||||||| |||||||| || |||||||||||| |||||| |
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| T |
41439829 |
cttttcactgcttttcttacattgttgaaaacttttgcttcttatgttggtccttatcttattgactcttttgttcaataccttgatggaaaaaggctat |
41439730 |
T |
|
| Q |
122 |
atgagaatcaaagctatgtgttggtttctgcatttttctttgcca---ttgtagagtgcttaaca--gaggcattagttccttaggttgcagccactcgg |
216 |
Q |
| |
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| ||||||||| |||||||||| |||||||||||||||||||| | ||||||||||||||||| |||||||| |||| |||||||||||| | |||| |
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| T |
41439729 |
acgagaatcaaggctatgtgtttgtttctgcatttttctttgcaaagcttgtagagtgcttaacacagaggcattggttctttaggttgcagcaattcgg |
41439630 |
T |
|
| Q |
217 |
acttcgaacccaagcactgcttgtgactatgatatataataaagccttaacactttcaggtcaattaagacagtgccatacttatggagaaataatcaat |
316 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||| |
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| T |
41439629 |
actttgaacccgagcactgcttgtgactatgatatatggtaaagccttaacactttcaggtcaatcaagacagtgccatacctctggagaaataatcaat |
41439530 |
T |
|
| Q |
317 |
ttcatgactgatgatg |
332 |
Q |
| |
|
|||||||||| ||||| |
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|
| T |
41439529 |
ttcatgactgttgatg |
41439514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 29 - 324
Target Start/End: Original strand, 14371342 - 14371645
Alignment:
| Q |
29 |
tcactgtttttcttgcattgttaaacaattttgcttcttatggtggtccttaacttattga--cttttgttcattatcttgatggaaaa-ggctatatga |
125 |
Q |
| |
|
|||||| || |||||||||| |||||| |||| || |||||| ||| ||||| |||||||| |||||||||| || |||||||||||| |||||||||| |
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|
| T |
14371342 |
tcactgcttctcttgcattggtaaacactttttctacttatgttggcccttatcttattgattcttttgttcaataccttgatggaaaaaggctatatga |
14371441 |
T |
|
| Q |
126 |
gaatcaaagctatgtgttggtttctgcatttttctttgcca---ttgtagagtgcttaacaga--ggcattagttccttaggttgcagccactcggactt |
220 |
Q |
| |
|
||||||| ||||||||||||||||| | ||||||||||| | ||||||| |||||||| | |||| ||||| |||||||||||| |||||||||| |
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| T |
14371442 |
gaatcaaggctatgtgttggtttcttcctttttctttgcaaagcttgtagaaagcttaacaaacaggcagcagttctttaggttgcagcaactcggactt |
14371541 |
T |
|
| Q |
221 |
cgaacccaagcactgcttgtgactatgatatataataaagccttaacactttcaggtcaattaagacagtgccatacttatggagaaataatcaatttca |
320 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||| |||||||||||||||||| ||||| ||| ||||| || |||| |||||||||||||||||||| |
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| T |
14371542 |
cgaatccaagcactgcttgtgacattgatatataacaaagccttaacactttcatctcaatcaaggcagtgtcacacttctggagaaataatcaatttca |
14371641 |
T |
|
| Q |
321 |
tgac |
324 |
Q |
| |
|
|||| |
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|
| T |
14371642 |
tgac |
14371645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 29 - 332
Target Start/End: Complemental strand, 14241979 - 14241668
Alignment:
| Q |
29 |
tcactgtttttcttgcattgttaaacaattttgcttcttatggtggtccttaacttattga--cttttgttcattatcttgatggaaaa-ggctatatga |
125 |
Q |
| |
|
|||||| ||||||||||||| |||||| |||| || |||||| ||||||||| |||||||| |||||||||| || |||| |||||| || ||||||| |
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|
| T |
14241979 |
tcactgcttttcttgcattggtaaacactttttctacttatgttggtccttatcttattgattcttttgttcaatacattgacggaaaaaggttatatga |
14241880 |
T |
|
| Q |
126 |
gaatcaaagctatgtgttggtttctgcatttttctttgcca---ttgtagagtgcttaacaga--ggcattagttccttaggttgcagccactcggactt |
220 |
Q |
| |
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||||||| ||||||||||||||||| | ||||| ||||| | ||||||||||||||||||| | |||| || | |||||||||||| ||| |||||| |
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|
| T |
14241879 |
gaatcaaggctatgtgttggtttcttcctttttatttgcaaagcttgtagagtgcttaacagaaagacatttgtactttaggttgcagcaactaggactt |
14241780 |
T |
|
| Q |
221 |
cgaacccaagcactgcttgtgactatgatatataataaagccttaacactttcaggtcaattaagacagtgccatacttatggagaaataatcaatttca |
320 |
Q |
| |
|
|||| || |||||||||||||| || ||||||||||||||||||||||||||| |||||| || ||||| || | || ||||||||| |||||||||| |
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|
| T |
14241779 |
cgaatccgtgcactgcttgtgacgatcatatataataaagccttaacactttcatgtcaatcaaagcagtgtcacagttctggagaaattatcaatttca |
14241680 |
T |
|
| Q |
321 |
tgactgatgatg |
332 |
Q |
| |
|
| |||| ||||| |
|
|
| T |
14241679 |
taactgttgatg |
14241668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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