View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4427_low_20 (Length: 292)
Name: NF4427_low_20
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4427_low_20 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 292
Target Start/End: Original strand, 21110859 - 21111134
Alignment:
| Q |
17 |
acctgtgctagagattgcaactcacctcttaaccgtctcaggtgtttaaaagtcactannnnnnnagattaaaatatcgaaagttaagcctagtgtacta |
116 |
Q |
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| T |
21110859 |
acctgtgctagagattgcaactcacctcttaaccgtctcaggtgtttaaaagtcactatttttttagattaaaatatcgaaagttaagtctagtgtacta |
21110958 |
T |
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| Q |
117 |
aatttgagaataatgcttaaatatgtctatgtctaattgagaataatgtcatccaatttgtgaggtggaaatgagaaatgagaacatttttgttatgcta |
216 |
Q |
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| T |
21110959 |
agtttgagaataatgcttaaatatgtctatgtctaattgagaataatgtcatccaatttgtgaggtggaaatgagaaatgagaacatttttgttatgcta |
21111058 |
T |
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| Q |
217 |
atatgacaatgatagttgcaatccaaaatttataccaactcgttggcatcaacagtcatgaaattgattatttctc |
292 |
Q |
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| T |
21111059 |
acatgacaatgatagttgcaatccaaaatttataccaactcgttggcatcaacagtcatgaaattgattatttctc |
21111134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 292
Target Start/End: Original strand, 41452668 - 41452712
Alignment:
| Q |
249 |
taccaactcgtt-ggcatcaacagtcatgaaattgattatttctc |
292 |
Q |
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| T |
41452668 |
taccaactctttcggcatcaacagtcatgaaattgattatttctc |
41452712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 261 - 292
Target Start/End: Original strand, 41439512 - 41439543
Alignment:
| Q |
261 |
ggcatcaacagtcatgaaattgattatttctc |
292 |
Q |
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| T |
41439512 |
ggcatcaacagtcatgaaattgattatttctc |
41439543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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