View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4427_low_25 (Length: 260)
Name: NF4427_low_25
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4427_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 41248558 - 41248336
Alignment:
| Q |
20 |
tataaaatatcattacatatgaaatagttattttattttatttgatcaactagtactaacacagctttgtatctttcttaggctattgcacttgaatctt |
119 |
Q |
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| T |
41248558 |
tataaaatattattacatatgaaatagttatttatttttatttgatcaactagtactaacacagctttgtatctttcttaggctattgcacttgaatctt |
41248459 |
T |
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| Q |
120 |
atcctaaaccactctcactgtcatcatggatatgccaatttgacataattgaaggtgcaacaatggccttgctacagagatggacggaacctcaatttga |
219 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41248458 |
atcctaaaccactctcactctcatcatggatatgccaatttgacataattgaaggtgcaacaatggccttgctacagagatggacgtaacctcaatttga |
41248359 |
T |
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| Q |
220 |
caccactctccctggtgttctcc |
242 |
Q |
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||||||||||||| ||||||||| |
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| T |
41248358 |
caccactctccctagtgttctcc |
41248336 |
T |
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