View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4427_low_27 (Length: 258)

Name: NF4427_low_27
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4427_low_27
NF4427_low_27
[»] chr4 (15 HSPs)
chr4 (17-252)||(253325-253562)
chr4 (30-258)||(5572752-5572980)
chr4 (30-258)||(5584959-5585187)
chr4 (28-258)||(5856501-5856731)
chr4 (93-258)||(3747347-3747510)
chr4 (114-258)||(5896756-5896896)
chr4 (51-258)||(5551600-5551807)
chr4 (23-258)||(5557365-5557600)
chr4 (23-258)||(5563150-5563385)
chr4 (114-258)||(5849683-5849822)
chr4 (80-258)||(5611966-5612142)
chr4 (114-258)||(5887905-5888045)
chr4 (26-138)||(5603964-5604080)
chr4 (51-258)||(5854591-5854798)
chr4 (114-193)||(5890965-5891044)
[»] chr8 (1 HSPs)
chr8 (51-258)||(1481590-1481797)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 253325 - 253562
Alignment:
Q  17 cagagatgctaatgaacttcaaagaactttatgctctcaacttttctaacaatggtctcaggcgaaatcccgtcttctatagggaacttgaaacaat--g 114  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  253325 cagagatgctaatggacttcaaagaactttatgctctcaacttttcaaacaatggtctcaggcgaaatcccgtcttctatagggaacttgaaacaattag 253424  T
Q  115 agtccttagacctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgtcccttctttcttatttattagaacctctccttcaatc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  253425 agtccttagacctctcaaataactctttagttagcaaaattcctgtgaaacttggaagcttgtcccttctttcttatttattagaacctctccttcaatc 253524  T
Q  215 atttggtgggggagattcccacaggtactcaacttcag 252  Q
    ||||||||||||||||||||||||||||||||||||||    
T  253525 atttggtgggggagattcccacaggtactcaacttcag 253562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 30 - 258
Target Start/End: Original strand, 5572752 - 5572980
Alignment:
Q  30 gaacttcaaagaactttatgctctcaacttttctaacaatggtctc--aggcgaaatcccgtcttctatagggaacttgaaacaat--gagtccttagac 125  Q
    ||||||||||| ||||||   ||||||| |||| |||||  |||||  |||  ||||||| ||||| |||||||||||||||||||  ||||||||||||    
T  5572752 gaacttcaaagcactttacattctcaacatttcaaacaaccgtctctcaggtaaaatcccatcttccatagggaacttgaaacaattggagtccttagac 5572851  T
Q  126 ctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgtcccttctttcttatttattagaacctctccttcaatcatttggtgggg 225  Q
    |||||||||||| ||||   | |  ||||||||||| | || | |||||||||| | ||||| |||||    |||||| |||||||||||||||||||||    
T  5572852 ctctcaaataacactttgactggtgaaattcctgtgcagctagaaagcttgtccttcctttcatattt----gaacctttccttcaatcatttggtgggg 5572947  T
Q  226 gagattcccacaggtactcaacttcagtcattt 258  Q
     |||| || ||||||||||||||||||||||||    
T  5572948 aagatcccaacaggtactcaacttcagtcattt 5572980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 30 - 258
Target Start/End: Original strand, 5584959 - 5585187
Alignment:
Q  30 gaacttcaaagaactttatgctctcaacttttctaacaatggtctc--aggcgaaatcccgtcttctatagggaacttgaaacaat--gagtccttagac 125  Q
    ||||||||||| ||||||   ||||||| |||| |||||  |||||  |||  ||||||| ||||| |||||||||||||||||||  ||||||||||||    
T  5584959 gaacttcaaagcactttacattctcaacatttcaaacaaccgtctctcaggtaaaatcccatcttccatagggaacttgaaacaattggagtccttagac 5585058  T
Q  126 ctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgtcccttctttcttatttattagaacctctccttcaatcatttggtgggg 225  Q
    |||||||||||| ||||   | |  ||||||||||| | || | |||||||||| | ||||| |||||    |||||| |||||||||||||||||||||    
T  5585059 ctctcaaataacactttgactggtgaaattcctgtgcagctagaaagcttgtccttcctttcatattt----gaacctttccttcaatcatttggtgggg 5585154  T
Q  226 gagattcccacaggtactcaacttcagtcattt 258  Q
     |||| || ||||||||||||||||||||||||    
T  5585155 aagatcccaacaggtactcaacttcagtcattt 5585187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 258
Target Start/End: Complemental strand, 5856731 - 5856501
Alignment:
Q  28 atgaacttcaaagaactttatgctctcaacttttctaacaatgg--tctcaggcgaaatcccgtcttctatagggaacttgaaacaat--gagtccttag 123  Q
    ||||||||||||| |||| ||| |||||||||||| |||||| |  ||||||| |||||||| |||||||| || ||||||||||| |  ||||| ||||    
T  5856731 atgaacttcaaagcacttcatgttctcaacttttcaaacaattgtctctcaggtgaaatcccatcttctattggaaacttgaaacagttggagtcattag 5856632  T
Q  124 acctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgtcccttctttcttatttattagaacctctccttcaatcatttggtgg 223  Q
    |||||||||||||||||||  || |  |||||||  || | |||| |||  ||||  | |||||||| ||    ||||||||| ||||||||||| | ||    
T  5856631 acctctcaaataactctttgattggtgaaattcccatgcaacttgcaagtctgtcattcctttcttactt----gaacctctcattcaatcatttcgcgg 5856536  T
Q  224 gggagattcccacaggtactcaacttcagtcattt 258  Q
    || ||||||| ||||| ||||||||||||||||||    
T  5856535 ggaagattccaacaggcactcaacttcagtcattt 5856501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 258
Target Start/End: Complemental strand, 3747510 - 3747347
Alignment:
Q  93 ctatagggaacttgaaacaat--gagtccttagacctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgtcccttctttctta 190  Q
    ||||||| ||||||||||| |  |||||||| ||||||||||||||||| || ||| |  |||||||  || | ||||  ||||||||| | ||||| ||    
T  3747510 ctataggaaacttgaaacagttagagtccttggacctctcaaataactcattggttggtgaaattcccatgcaacttgccagcttgtccttcctttcata 3747411  T
Q  191 tttattagaacctctccttcaatcatttggtgggggagattcccacaggtactcaacttcagtcattt 258  Q
    |||    |||||||||||||||||||||||| ||| ||||||| |||||||| |||||||||||||||    
T  3747410 ttt----gaacctctccttcaatcatttggttgggaagattccaacaggtacgcaacttcagtcattt 3747347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 114 - 258
Target Start/End: Original strand, 5896756 - 5896896
Alignment:
Q  114 gagtccttagacctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgtcccttctttcttatttattagaacctctccttcaat 213  Q
    |||||||| |||||||||||||||||||| ||| |  ||||||| ||| | |||| ||| |||||  | |||||||||||    |||||| ||| |||||    
T  5896756 gagtccttggacctctcaaataactctttggttggtgaaattccggtgcaacttgcaagtttgtcattcctttcttattt----gaacctatccctcaat 5896851  T
Q  214 catttggtgggggagattcccacaggtactcaacttcagtcattt 258  Q
    |||||||||||| ||||||| |||||||| |||||||||||||||    
T  5896852 catttggtggggaagattccaacaggtacccaacttcagtcattt 5896896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 258
Target Start/End: Complemental strand, 5551807 - 5551600
Alignment:
Q  51 tctcaacttttctaacaatggt--ctcaggcgaaatcccgtcttctatagggaacttgaaacaat--gagtccttagacctctcaaataactctttagtt 146  Q
    |||||||||||| |||||||||  ||| || |||||||| ||  |||| |||||| ||||||| |  ||||| |||||||||||||||||||| || |||    
T  5551807 tctcaacttttcgaacaatggtatctccggtgaaatcccatcaactattgggaacctgaaacagttagagtcattagacctctcaaataactccttggtt 5551708  T
Q  147 agcaaaattcctgtgaatcttggaagcttgtcccttctttcttatttattagaacctctccttcaatcatttggtgggggagattcccacaggtactcaa 246  Q
     |   ||| |||||| | |||| |||||| ||  | |||||||||||    |||||| ||||||||||||||||| ||  |||| || ||||||||||||    
T  5551707 ggtgtaatacctgtgcaacttgcaagcttatcattcctttcttattt----gaacctttccttcaatcatttggttggaaagatccctacaggtactcaa 5551612  T
Q  247 cttcagtcattt 258  Q
    ||||||||||||    
T  5551611 cttcagtcattt 5551600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 258
Target Start/End: Complemental strand, 5557600 - 5557365
Alignment:
Q  23 tgctaatgaacttcaaagaactttatgctctcaacttttctaacaatggtctca--ggcgaaatcccgtcttctatagggaacttgaaacaat--gagtc 118  Q
    |||||||| ||||||||| | |  ||| |||||||||||| ||||||| ||||   || |||||||| ||  |||| |||||| ||||||| |  |||||    
T  5557600 tgctaatggacttcaaagcaatccatgttctcaacttttcaaacaatgctctctctggtgaaatcccatcaactattgggaacctgaaacagttggagtc 5557501  T
Q  119 cttagacctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgtcccttctttcttatttattagaacctctccttcaatcattt 218  Q
    ||| ||||||||||||||||| || ||| |  ||||||| ||| | |||| |||| ||||  | |||||||||||    |||||||||||||||||||||    
T  5557500 cttggacctctcaaataactcattggttggtgaaattccagtgcaacttgcaagcatgtcattcctttcttattt----gaacctctccttcaatcattt 5557405  T
Q  219 ggtgggggagattcccacaggtactcaacttcagtcattt 258  Q
     || |||  ||| || |||||||| |||||||||||||||    
T  5557404 agttgggatgatcccaacaggtacccaacttcagtcattt 5557365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 258
Target Start/End: Complemental strand, 5563385 - 5563150
Alignment:
Q  23 tgctaatgaacttcaaagaactttatgctctcaacttttctaacaatggtctca--ggcgaaatcccgtcttctatagggaacttgaaacaat--gagtc 118  Q
    |||| ||| ||||||||| |||||||| |||||||||||| ||||||| ||||   || ||||| || ||  |||| |||||| ||||||| |  |||||    
T  5563385 tgctgatggacttcaaagcactttatgttctcaacttttcaaacaatgctctctctggtgaaattccatcaactatcgggaacctgaaacagttggagtc 5563286  T
Q  119 cttagacctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgtcccttctttcttatttattagaacctctccttcaatcattt 218  Q
    ||| |||||||||||||||||| | ||| | || ||||||||| |  ||| |||| ||||  | |||||||  ||    |||||| ||| ||||||||||    
T  5563285 cttggacctctcaaataactctctggttggtaagattcctgtgcagattgcaagcctgtcattcctttctttctt----gaacctttccatcaatcattt 5563190  T
Q  219 ggtgggggagattcccacaggtactcaacttcagtcattt 258  Q
    ||||||| |||| || |||||||| |||||||| ||||||    
T  5563189 ggtggggaagatcccaacaggtacccaacttcaatcattt 5563150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 258
Target Start/End: Original strand, 5849683 - 5849822
Alignment:
Q  114 gagtccttagacctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgtcccttctttcttatttattagaacctctccttcaat 213  Q
    |||||||| |||||||||||||||||||| ||| |  || |||||||| |  ||| || ||||| | | |||||||||||    |||||| |||||||||    
T  5849683 gagtccttggacctctcaaataactctttggttggtgaa-ttcctgtgcagtttgcaaacttgttcttcctttcttattt----gaacctatccttcaat 5849777  T
Q  214 catttggtgggggagattcccacaggtactcaacttcagtcattt 258  Q
    |||||||||||| |||| || |||||||| |||||||||||||||    
T  5849778 catttggtggggaagatcccaacaggtacccaacttcagtcattt 5849822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 258
Target Start/End: Complemental strand, 5612142 - 5611966
Alignment:
Q  80 gaaatcccgtcttctatagggaacttgaaacaat--gagtccttagacctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgt 177  Q
    |||||||| ||  |||| |||||| ||||||| |  |||||||| ||| ||||||| ||||| || ||| |  |||||||| || | |||| |||| |||    
T  5612142 gaaatcccatcaactattgggaacctgaaacagttagagtccttggacttctcaaacaactccttggttggtgaaattcctctgcaacttgcaagcatgt 5612043  T
Q  178 cccttctttcttatttattagaacctctccttcaatcatttggtgggggagattcccacaggtactcaacttcagtcattt 258  Q
    |  | |||||||||||    ||| || ||||||||||||||||| ||| |||| || ||||||||||||||||||||||||    
T  5612042 cattcctttcttattt----gaaactttccttcaatcatttggttgggaagatcccaacaggtactcaacttcagtcattt 5611966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 258
Target Start/End: Original strand, 5887905 - 5888045
Alignment:
Q  114 gagtccttagacctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgtcccttctttcttatttattagaacctctccttcaat 213  Q
    |||||||| ||||||||||| ||||| || ||| |  |||||||| || | |||| |||| ||||  | |||| ||||||    |||||| || ||||||    
T  5887905 gagtccttggacctctcaaacaactccttggttggtgaaattcctctgcaacttgcaagcatgtcattcctttgttattt----gaacctttcgttcaat 5888000  T
Q  214 catttggtgggggagattcccacaggtactcaacttcagtcattt 258  Q
    |||||||| ||| |||| || |||||||| |||||||||||||||    
T  5888001 catttggttgggaagatcccaacaggtacccaacttcagtcattt 5888045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 5604080 - 5603964
Alignment:
Q  26 taatgaacttcaaagaactttatgctctcaacttttctaacaatggtctc--aggcgaaatcccgtcttctatagggaacttgaaacaat--gagtcctt 121  Q
    ||||| ||||||||| |||||||| |||||||||||| ||||||||||||   || |||||||| ||  || | |||||| ||||||| |  ||||| ||    
T  5604080 taatggacttcaaagcactttatgttctcaacttttcaaacaatggtctctatggtgaaatcccatcaactgttgggaacctgaaacagttggagtcttt 5603981  T
Q  122 agacctctcaaataact 138  Q
     ||||||||||||||||    
T  5603980 ggacctctcaaataact 5603964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 258
Target Start/End: Original strand, 5854591 - 5854798
Alignment:
Q  51 tctcaacttttctaacaatggt--ctcaggcgaaatcccgtcttctatagggaacttgaaacaat--gagtccttagacctctcaaataactctttagtt 146  Q
    |||||||||||| ||||||| |  ||| || |||||||| ||  |||| |||||| ||||||| |  ||||| |||||||||||||||||||| || |||    
T  5854591 tctcaacttttcaaacaatgctttctctggtgaaatcccatcaactatcgggaacctgaaacagttagagtcattagacctctcaaataactccttggtt 5854690  T
Q  147 agcaaaattcctgtgaatcttggaagcttgtcccttctttcttatttattagaacctctccttcaatcatttggtgggggagattcccacaggtactcaa 246  Q
     |   ||| |||||| | || | ||||||||   | || ||||||||    |||||| ||||||||| ||||||| ||  |||| || ||||| ||||||    
T  5854691 ggtgtaatacctgtgcaactggcaagcttgttgttcctctcttattt----gaacctttccttcaattatttggttggaaagatcccgacaggaactcaa 5854786  T
Q  247 cttcagtcattt 258  Q
    ||||||||||||    
T  5854787 cttcagtcattt 5854798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 5890965 - 5891044
Alignment:
Q  114 gagtccttagacctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgtcccttctttcttattt 193  Q
    |||||||| |||||||||||||||||||| ||| |  ||||||||||| | |||| |||| ||||  | |||||||||||    
T  5890965 gagtccttggacctctcaaataactctttggttggtgaaattcctgtgcagcttgcaagcatgtcattcctttcttattt 5891044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 258
Target Start/End: Complemental strand, 1481797 - 1481590
Alignment:
Q  51 tctcaacttttctaacaatggt--ctcaggcgaaatcccgtcttctatagggaacttgaaacaat--gagtccttagacctctcaaataactctttagtt 146  Q
    |||||||||||| ||||||| |  ||| || |||||||| ||  |||| |||||| ||||||| |  |||||||||||||||||||||||||||||  |     
T  1481797 tctcaacttttcaaacaatgctttctccggtgaaatcccatcgactattgggaacctgaaacagttagagtccttagacctctcaaataactctttgttc 1481698  T
Q  147 agcaaaattcctgtgaatcttggaagcttgtcccttctttcttatttattagaacctctccttcaatcatttggtgggggagattcccacaggtactcaa 246  Q
     | |||||||||||| |  ||| | || ||||  |||||||||||||    ||||||||| |||||||||||||| |||  |||||| ||||||||||||    
T  1481697 ggtaaaattcctgtgcagattgtatgcatgtcatttctttcttattt----gaacctctctttcaatcatttggtagggatgattccaacaggtactcaa 1481602  T
Q  247 cttcagtcattt 258  Q
    ||||||||||||    
T  1481601 cttcagtcattt 1481590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University