View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4427_low_29 (Length: 250)
Name: NF4427_low_29
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4427_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 47264719 - 47264482
Alignment:
| Q |
1 |
cattgacggttcatgacgatagataaacatcataggaatattgaaacgtaagccttcttgatcatctatgtcagacaatagtttaacttcgcgaggagtg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47264719 |
cattgacggttcatgacgatagataaacatcataggaatattgaaacgtaagccttcttggtcatctatgtcagacaatagtttaacttcgcgaggagtg |
47264620 |
T |
|
| Q |
101 |
ggtgcagctggtggcaccaacactggttggctcctccgcactgtgaacaataatggtgctgaagtcatgatatgatatgagaaaataagtgttgtgtgag |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47264619 |
ggtgcagctggtggcaccaactctggttggctcctccgcactgtgaacaataatggtgctgaagtcatgatatgatatgagaaaataagtgttgtgtgag |
47264520 |
T |
|
| Q |
201 |
ttaataaaaatgacttgtgtacgtaaacctgaagtctgtg |
240 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |
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| T |
47264519 |
ttaat--aaatgacttgtgtacgtaaacctgaagtctgtg |
47264482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 47275287 - 47275115
Alignment:
| Q |
1 |
cattgacggttcatgacgatagataaacatcataggaatattgaaacgtaagccttcttgatcatctatgtcagacaatagtttaacttcgcgaggagtg |
100 |
Q |
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|||||| |||||||||||||||||||| || ||||| ||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
47275287 |
cattgatggttcatgacgatagataaatatgataggcatattgaaacgcaagcattcttgatcatctatgtcagataatagtttaacttcgcgaggagtg |
47275188 |
T |
|
| Q |
101 |
ggtgcagctggtggcaccaacactggttggctcctccgcactgtgaacaataatggtgctgaagtcatgatat |
173 |
Q |
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| T |
47275187 |
ggtgcagctggtggcaccaactctggttggcacctccgcactgtgaacaacaatggtgatgaagtcatgatat |
47275115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 47301062 - 47301234
Alignment:
| Q |
1 |
cattgacggttcatgacgatagataaacatcataggaatattgaaacgtaagccttcttgatcatctatgtcagacaatagtttaacttcgcgaggagtg |
100 |
Q |
| |
|
|||||| ||||| ||| |||||||||| ||||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||| | ||||||| |
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| T |
47301062 |
cattgatggttcgtgatgatagataaagatcataggaatattgaagcgcaaaccttcttgatcatctatgtcagataatagtttaacttcacaaggagtg |
47301161 |
T |
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| Q |
101 |
ggtgcagctggtggcaccaacactggttggctcctccgcactgtgaacaataatggtgctgaagtcatgatat |
173 |
Q |
| |
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||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||| |||||||||||||| |
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| T |
47301162 |
ggtgcagctggtggcaccaactctggttggcacctccgcactgtgaacaacaatggtgatgaagtcatgatat |
47301234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 47282025 - 47281862
Alignment:
| Q |
1 |
cattgacggttcatgacgatagataaacatcataggaatattgaaacgtaagccttcttgatcatctatgtcagacaatagtttaacttcgcgaggagtg |
100 |
Q |
| |
|
|||||| ||||| |||||||||||||| || ||||| ||||||||||| || | ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
47282025 |
cattgatggttcgtgacgatagataaatatgataggcatattgaaacgcaaacattcttgatcatctatgtcagataatagtttaacttcgcgaggagtg |
47281926 |
T |
|
| Q |
101 |
ggtgcagctggtggcaccaacactggttggctcctccgcactgtgaacaataatggtgctgaag |
164 |
Q |
| |
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||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||| ||||| |
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| T |
47281925 |
ggtgcagctggtggcaccaactctggttggcacctccgcactgtcaacaataatggtgatgaag |
47281862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 40 - 173
Target Start/End: Complemental strand, 47240814 - 47240681
Alignment:
| Q |
40 |
attgaaacgtaagccttcttgatcatctatgtcagacaatagtttaacttcgcgaggagtgggtgcagctggtggcaccaacactggttggctcctccgc |
139 |
Q |
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|||||| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
47240814 |
attgaatcgcaaaccttcttgatcatctatgtcagataatagtttaacttcgcgaggagtgggtgcagctggtggcaccaactctggttggcacctccgc |
47240715 |
T |
|
| Q |
140 |
actgtgaacaataatggtgctgaagtcatgatat |
173 |
Q |
| |
|
|||||||||| ||| | || |||||||||||||| |
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| T |
47240714 |
actgtgaacattaacgatgatgaagtcatgatat |
47240681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 47296486 - 47296642
Alignment:
| Q |
17 |
cgatagataaacatcataggaatattgaaacgtaagccttcttgatcatctatgtcagacaatagtttaacttcgcgaggagtgggtgcagctggtggca |
116 |
Q |
| |
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||||||||||| || | |||| ||||||| || | ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
47296486 |
cgatagataaatatgacaggactattgaatcgcataccttcttgatcatctatgtcagataatagtttaacttcacgaggagtgggtgcagctggtggca |
47296585 |
T |
|
| Q |
117 |
ccaacactggttggctcctccgcactgtgaacaataatggtgctgaagtcatgatat |
173 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||| ||| | || |||||||||||||| |
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| T |
47296586 |
ccaactctggttggcacctccgcactgtgaacattaacgatgatgaagtcatgatat |
47296642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 47255675 - 47255512
Alignment:
| Q |
1 |
cattgacggttcatgacgatagataaacatcataggaatattgaaacgtaagccttcttgatcatctatgtcagacaatagtttaacttcgcgaggagtg |
100 |
Q |
| |
|
|||||| |||||||||||| ||| ||| || | ||||| ||||||||| | ||||||||||||||| |||||||| | ||||||||||| |||||||| |
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| T |
47255675 |
cattgaaggttcatgacgaaagacaaatatgacaggaagattgaaacgaaggccttcttgatcatcaatgtcagagaggagtttaacttcatgaggagtg |
47255576 |
T |
|
| Q |
101 |
ggtgcagctggtggcaccaacactggttggctcctccgcactgtgaacaataatggtgctgaag |
164 |
Q |
| |
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||||||||||| | |||||| |||||||| |||||||||||||||||||||||||| ||||| |
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| T |
47255575 |
ggtgcagctggaagtaccaactctggttgggacctccgcactgtgaacaataatggtgatgaag |
47255512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 32729388 - 32729216
Alignment:
| Q |
1 |
cattgacggttcatgacgatagataaacatcataggaatattgaaacgtaagccttcttgatcatctatgtcagacaatagtttaacttcgcgaggagtg |
100 |
Q |
| |
|
|||||| ||||| ||||||||||||| || | ||||| ||||||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
32729388 |
cattgatggttcgcgacgatagataaatatgacaggaacattgaaacgcaaaccttcttgatcatctatatcagataatagtttaacttcgcgaggagtg |
32729289 |
T |
|
| Q |
101 |
ggtgcagctggtggcaccaacactggttggctcctccgcactgtgaacaataatggtgctgaagtcatgatat |
173 |
Q |
| |
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|||||| |||||||||||||| ||||||||| |||||||||||||||||| ||||||| |||||||||||||| |
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| T |
32729288 |
ggtgcaactggtggcaccaactctggttggcacctccgcactgtgaacaacaatggtgatgaagtcatgatat |
32729216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 20511718 - 20511577
Alignment:
| Q |
8 |
ggttcatgacgatagataaacatcataggaatattgaaacgtaagccttcttgatcatctatgtcagacaatagtttaacttcgcgaggagtgggtgcag |
107 |
Q |
| |
|
||||||||| |||||||||| || | | |||||||| |||| | | || |||||||||||||||||| | || ||||| ||| |||||||||||||||| |
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| T |
20511718 |
ggttcatgatgatagataaagatgagaagaatattgcaacggagacttttttgatcatctatgtcagatagtattttaaattcacgaggagtgggtgcag |
20511619 |
T |
|
| Q |
108 |
ctggtggcaccaacactggttggctcctccgcactgtgaaca |
149 |
Q |
| |
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|||| || |||| | |||||||| ||| ||||| ||||||| |
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|
| T |
20511618 |
ctggaggtaccagctgtggttggcaccttcgcacagtgaaca |
20511577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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