View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4427_low_30 (Length: 250)
Name: NF4427_low_30
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4427_low_30 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 45 - 250
Target Start/End: Original strand, 8817260 - 8817469
Alignment:
| Q |
45 |
gtttaataaatcatatt-aattcgtattttgttnnnnnnntgaaacttgtttgagaaatattgttataatttctaaatattctaaacattcttgaaaaaa |
143 |
Q |
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| T |
8817260 |
gtttaataaatcatatttaattcgtattttgttaaaaaaatgaaacttgtttgagaaatattgttataatttctaaatattctaaacattcttgaaaaaa |
8817359 |
T |
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| Q |
144 |
ctcattagaaaacatgatgtgactt-aaaacatagataaaaaatcatcgtgaacttaactcagttggtaggaaacattaca--ttatacatgcaagagtc |
240 |
Q |
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| T |
8817360 |
ctcattagaaaacatgttgtgacttaaaaacatagataaaaaattatcgtgggcttaactcagttggtagggaacattacattttatatatgcaagagtc |
8817459 |
T |
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| Q |
241 |
ggggttaatc |
250 |
Q |
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| T |
8817460 |
ggggttaatc |
8817469 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 23225863 - 23225919
Alignment:
| Q |
189 |
tcgtgaacttaactcagttggtaggaaacattacattatacatgcaagagtcggggtt |
246 |
Q |
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| T |
23225863 |
tcgtgaacttaactcagttggtagg-aacaattcataatatatgcaagattcggggtt |
23225919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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