View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4427_low_34 (Length: 238)
Name: NF4427_low_34
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4427_low_34 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 48666870 - 48667090
Alignment:
| Q |
18 |
agtctcatagacggtctaaaggaccgaagtctgtgggaatactatgtggagtcactaggatgtcaaagactctaattacggtggttttcaactacatgtt |
117 |
Q |
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| T |
48666870 |
agtctcatagacggtctaaaggaccgaagtctgtgggaatactatgtggagtcactaggatgtcaaagactctaattacggtggttttcaactacatgtt |
48666969 |
T |
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| Q |
118 |
taaaacatccacttaatcatatactccctcctttctatattgagagttacccttgcttattatacacattnnnnnnngattacaatgaaataaagagaat |
217 |
Q |
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| T |
48666970 |
taaaacatccacttaatcatatactccctcctttctatattgagagttacccttgcttattatacacattaaaaaaagattacaatgaaataaaaagaat |
48667069 |
T |
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| Q |
218 |
ataagtttattaaattagctt |
238 |
Q |
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|||||||||| |||||||||| |
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| T |
48667070 |
ataagtttatcaaattagctt |
48667090 |
T |
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