View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4427_low_35 (Length: 237)
Name: NF4427_low_35
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4427_low_35 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 48568354 - 48568564
Alignment:
| Q |
1 |
aatttaagcagactaatcactcgtgtgatttaaagcaagaaaatgtaataaaaaatctggagtataataagggaaatgaatgctatataagaaatgccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48568354 |
aatttaagcagactaatcactcgtgtgatttaaagcaagaaaatgtaataaaaaatctggagtataataagggaaatgaatgctatataagaaatgccat |
48568453 |
T |
|
| Q |
101 |
catgtcaacttggttattgtcttggttattgtcctcgtcttccttggaagtaagaaagtgtccattttctttggctcggtgtttatataaatgttcttaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48568454 |
catgtcaa------------cttggttattgtcctcgtcttccttggaagtaagaaagtgtccattttctttggctcggtgtttatataaatgttcttaa |
48568541 |
T |
|
| Q |
201 |
tcaggggttatttagcttgttat |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
48568542 |
tcaggggttatttagcttgttat |
48568564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University