View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4427_low_36 (Length: 226)
Name: NF4427_low_36
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4427_low_36 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 50 - 226
Target Start/End: Original strand, 31476868 - 31477044
Alignment:
| Q |
50 |
tgttaacaagttgatcacatctttgaagctcatgaatagtaaatttggcatgtcttcaattttggaacttgatcatcacttttcttgtttgattagagta |
149 |
Q |
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| T |
31476868 |
tgttaacaagttgatcacatctttgaagcacatgaatagtaaatttggcatgtcttcaattttggaacttgatcatcacttttcttgtttgattagagta |
31476967 |
T |
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| Q |
150 |
tttagggaagtcatagtaatgaacttatctgtttttcaattcattttgtcatttttgaatgtgtcttcatcaaagtc |
226 |
Q |
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| T |
31476968 |
tttagggaagtcatagtaatgaacttatctgtttttcaattcattttgtcatttttgaatgtgtcttcatcaaagtc |
31477044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 50 - 226
Target Start/End: Original strand, 31502232 - 31502408
Alignment:
| Q |
50 |
tgttaacaagttgatcacatctttgaagctcatgaatagtaaatttggcatgtcttcaattttggaacttgatcatcacttttcttgtttgattagagta |
149 |
Q |
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| T |
31502232 |
tgttaacaagttgatcacatctttgaagcaaatggatagtaaatttggcatgtcttcaattttggaacttgatcaacacctttattctttgattagagtg |
31502331 |
T |
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| Q |
150 |
tttagggaagtcatagtaatgaacttatctgtttttcaattcattttgtcatttttgaatgtgtcttcatcaaagtc |
226 |
Q |
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| T |
31502332 |
tttaaagaagtcatagcaatgaatttgtctatttttcaaatcattttgtcattcttgactatgtcttcatcaaagtc |
31502408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 56 - 226
Target Start/End: Original strand, 31467028 - 31467198
Alignment:
| Q |
56 |
caagttgatcacatctttgaagctcatgaatagtaaatttggcatgtcttcaattttggaacttgatcatcacttttcttgtttgattagagtatttagg |
155 |
Q |
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| T |
31467028 |
caagttgatcacaagtttgaagcatatggatagtaaatttggggtgtcccaaattttagaacttgatcatcacctttgctctataattagagtgtttagg |
31467127 |
T |
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| Q |
156 |
gaagtcatagtaatgaacttatctgtttttcaattcattttgtcatttttgaatgtgtcttcatcaaagtc |
226 |
Q |
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| T |
31467128 |
gaagtgattacaatgaacttgtctgtttttcaattcattttgtcatttttgaatgtgtcttcatcaaagtc |
31467198 |
T |
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