View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4427_low_38 (Length: 201)
Name: NF4427_low_38
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4427_low_38 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 49206853 - 49206650
Alignment:
| Q |
1 |
tttaagactgtccatgagcaaacaggcatgttgcctccggcttggatgggatctttacctgacaaaaactcttaatttggagatgcaagtattaggttta |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49206853 |
tttaagactgtccatgagcaaacaggcatgtttcctccggcttggatgggatctttacctgacaaaaactcttaatttggagatgcaagtattaggttta |
49206754 |
T |
|
| Q |
101 |
caatagcagtaccttttattgtgtgatatgtgttttattcaccagtcttttattagttttaggttcaaact---actatgtcatatgatgatttagttta |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
49206753 |
caatagcagtaccttttattgtgtgatatgtgttttattcaccagtcttttattagttttaggttcaaactactactatgtcatatgatgatttagttta |
49206654 |
T |
|
| Q |
198 |
catt |
201 |
Q |
| |
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|||| |
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| T |
49206653 |
catt |
49206650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 49201898 - 49201690
Alignment:
| Q |
1 |
tttaagactgtccatgagcaaacaggcatgttgcctccggcttggatgggatctttacctgacaaaaactcttaatttgga------gatgcaagtatta |
94 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||||||||||| | ||| |||| |||| | ||||||| ||| |||||||||||| |
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| T |
49201898 |
tttaagactgtccatgagcaaacgggcatgttgcctcctgcttggatgggagccttatctgagaaaagcccttaattaggatgatgcaatgcaagtatta |
49201799 |
T |
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| Q |
95 |
ggtttacaatagcagtaccttttattgtgtgat--atgtgttttattcaccagtcttttattagttttaggttcaaactactatgtcatatgatgattta |
192 |
Q |
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|||||| | || |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| |
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| T |
49201798 |
ggtttatatcagtagtaccttttattgtgtgattgatgtgtttgattcaccagtcttttattagttttaggttcaaactattatgttatatgacaattta |
49201699 |
T |
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| Q |
193 |
gtttacatt |
201 |
Q |
| |
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|||||||| |
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| T |
49201698 |
atttacatt |
49201690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 49211439 - 49211313
Alignment:
| Q |
1 |
tttaagactgtccatgagcaaacaggcatgttgcctccggcttggatgggatctttacctgacaaa-------aactcttaatttggagatgcaagtatt |
93 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| || |||||||| ||||||||||||||| |
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| T |
49211439 |
tttaagactgtccatgagcaaacaggcatgttgcctcctgcttggatgggatccttatctgacaaaagctcttaagtcttaattaggagatgcaagtatt |
49211340 |
T |
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| Q |
94 |
aggtttacaatagcagtaccttttatt |
120 |
Q |
| |
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||||||||| ||| |||| |||||||| |
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| T |
49211339 |
aggtttacagtagtagtatcttttatt |
49211313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 49186918 - 49186818
Alignment:
| Q |
1 |
tttaagactgtccatgagcaaacaggcatgttgcctccggcttggatgggatctttacctgacaaaaactcttaatttgga-gatgcaagtattaggttt |
99 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||| |||||||||||| | ||| |||| |||| ||||| ||| ||| |||||||||||| ||||| |
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| T |
49186918 |
tttaagactgtccatgagcaaacgggcatgttgcctcctgcttggatgggagccttatctgagaaaagctcttgattaggatgatgcaagtatttggttt |
49186819 |
T |
|
| Q |
100 |
a |
100 |
Q |
| |
|
| |
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| T |
49186818 |
a |
49186818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 49190621 - 49190552
Alignment:
| Q |
1 |
tttaagactgtccatgagcaaacaggcatgttgcctccggcttggatgggatctttacctgacaaaaact |
70 |
Q |
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||||||||||| ||||||||||| || ||||| || || |||||||||||| || ||||||||||||| |
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| T |
49190621 |
tttaagactgttcatgagcaaacgggaatgttaccacctgcttggatgggagtcttgcctgacaaaaact |
49190552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 32593664 - 32593784
Alignment:
| Q |
1 |
tttaagactgtccatgagcaaacaggcatgttgcctccggcttggatgggatctttacctgacaaaaactcttaatttgga-gatgcaagtattaggttt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| | ||||||| ||||||||| ||| |||||||||||||||||| |
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| T |
32593664 |
tttaagactgtccatgagcaaacaggcatgttgcctcctgcttggatgggaaccttatccgacaaaagctcttaattaggaggatgcaagtattaggttt |
32593763 |
T |
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| Q |
100 |
acaatagcagtaccttttatt |
120 |
Q |
| |
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| | ||| | ||||||||||| |
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| T |
32593764 |
atagtagtaataccttttatt |
32593784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 31526734 - 31526634
Alignment:
| Q |
1 |
tttaagactgtccatgagcaaacaggcatgttgcctccggcttggatgggatctttacctgacaaaaactcttaatttgga-gatgcaagtattaggttt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||| | ||| | ||||||| ||||||||| ||| |||||||||||||||||| |
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| T |
31526734 |
tttaagactgtccatgagcaaacaggcatgttgcctcctgcttggataggaaccttatcagacaaaagctcttaattaggaggatgcaagtattaggttt |
31526635 |
T |
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| Q |
100 |
a |
100 |
Q |
| |
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| |
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| T |
31526634 |
a |
31526634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 51823612 - 51823495
Alignment:
| Q |
4 |
aagactgtccatgagcaaacaggcatgttgcctccggcttggatgggatctttacctgacaaaaactcttaatttgga-gatgc---aagtattaggttt |
99 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||| | ||| | ||||||| ||||||||| ||| ||||| ||||||||||||| |
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| T |
51823612 |
aagactgtccatgagcaaacaggcatgttgcctcctgcttggatgggaaccttatccgacaaaagctcttaattaggaggatgcaagaagtattaggttt |
51823513 |
T |
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| Q |
100 |
acaatagcagtaccttttatt |
120 |
Q |
| |
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|||| ||||||||||||| |
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| T |
51823512 |
---atagtagtaccttttatt |
51823495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 37030088 - 37030012
Alignment:
| Q |
1 |
tttaagactgtccatgagcaaacaggcatgttgcctccggcttggatgggatctttacctgacaaaaactcttaatt |
77 |
Q |
| |
|
||||||||||||||||||||||| || ||||| || || |||||||||||| || |||||||||||||||||||| |
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| T |
37030088 |
tttaagactgtccatgagcaaacgggaatgttaccacctgcttggatgggagtcttgcctgacaaaaactcttaatt |
37030012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 37029918 - 37029863
Alignment:
| Q |
146 |
tcttttattagttttaggttcaaactactatgtcatatgatgatttagtttacatt |
201 |
Q |
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||||||||||||||| |||| ||||| ||| ||||||||||||||| |||||||| |
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| T |
37029918 |
tcttttattagttttgggtttaaactcttatatcatatgatgatttaatttacatt |
37029863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 52267392 - 52267516
Alignment:
| Q |
1 |
tttaagactgtccatgagcaaacaggcatgttgcctccggcttggatgggatctttacctgacaaaaactcttaatttggag-----atgcaagtattag |
95 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| | ||||||| ||||||||| |||| | ||||||||||| |
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| T |
52267392 |
tttaagactgtccatgagcaaacaggcatgttgcctcctgcttggatgggaaccttatccgacaaaagctcttaattaggaggatgcaagcaagtattag |
52267491 |
T |
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| Q |
96 |
gtttacaatagcagtaccttttatt |
120 |
Q |
| |
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||||| | ||| ||||||||||||| |
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| T |
52267492 |
gtttatagtagtagtaccttttatt |
52267516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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