View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4427_low_8 (Length: 420)

Name: NF4427_low_8
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4427_low_8
NF4427_low_8
[»] chr2 (14 HSPs)
chr2 (49-178)||(29455275-29455407)
chr2 (193-273)||(29455477-29455557)
chr2 (193-273)||(43564267-43564347)
chr2 (133-178)||(43564151-43564196)
chr2 (193-233)||(7574085-7574125)
chr2 (193-233)||(41646702-41646742)
chr2 (347-408)||(7573870-7573932)
chr2 (347-408)||(16668465-16668527)
chr2 (344-408)||(41646492-41646557)
chr2 (193-233)||(16668680-16668720)
chr2 (344-404)||(43564418-43564478)
chr2 (243-273)||(7574014-7574044)
chr2 (243-273)||(16668609-16668639)
chr2 (344-385)||(29455611-29455652)
[»] chr8 (10 HSPs)
chr8 (344-408)||(10186641-10186705)
chr8 (193-273)||(918909-918989)
chr8 (344-408)||(4138604-4138668)
chr8 (193-233)||(8150485-8150525)
chr8 (193-233)||(10186462-10186502)
chr8 (344-385)||(918799-918840)
chr8 (193-233)||(11428136-11428176)
chr8 (141-174)||(919075-919108)
chr8 (197-233)||(20172070-20172106)
chr8 (353-385)||(20172253-20172285)
[»] chr4 (21 HSPs)
chr4 (344-408)||(21632562-21632626)
chr4 (344-408)||(34737583-34737648)
chr4 (193-233)||(2504995-2505035)
chr4 (193-233)||(46092411-46092451)
chr4 (193-233)||(46134936-46134976)
chr4 (193-233)||(53830499-53830539)
chr4 (347-408)||(2504780-2504842)
chr4 (344-408)||(46092597-46092662)
chr4 (344-404)||(53830294-53830355)
chr4 (193-233)||(20036391-20036431)
chr4 (193-233)||(34737793-34737833)
chr4 (357-404)||(21803195-21803242)
chr4 (193-233)||(5430821-5430861)
chr4 (243-273)||(2504924-2504954)
chr4 (243-273)||(34737725-34737755)
chr4 (243-273)||(46092492-46092522)
chr4 (243-273)||(46135017-46135047)
chr4 (243-273)||(53830428-53830458)
chr4 (344-385)||(2500455-2500496)
chr4 (193-233)||(2500638-2500678)
chr4 (353-385)||(5431007-5431039)
[»] chr5 (7 HSPs)
chr5 (344-408)||(21604856-21604921)
chr5 (344-408)||(37301690-37301755)
chr5 (193-233)||(36991151-36991191)
chr5 (193-233)||(21605061-21605101)
chr5 (193-229)||(37301986-37302022)
chr5 (344-408)||(36991339-36991404)
chr5 (243-273)||(36991232-36991262)
[»] scaffold0516 (1 HSPs)
scaffold0516 (193-233)||(3355-3395)
[»] chr7 (10 HSPs)
chr7 (193-233)||(5768058-5768098)
chr7 (193-233)||(25419569-25419609)
chr7 (193-233)||(39066864-39066904)
chr7 (193-233)||(47233816-47233856)
chr7 (347-408)||(25419354-25419416)
chr7 (243-273)||(5767987-5768017)
chr7 (243-273)||(25419498-25419528)
chr7 (344-408)||(47233607-47233672)
chr7 (197-233)||(44393780-44393816)
chr7 (353-385)||(44393964-44393996)
[»] chr6 (4 HSPs)
chr6 (193-233)||(13433447-13433487)
chr6 (347-408)||(13433232-13433294)
chr6 (193-233)||(16712103-16712143)
chr6 (243-273)||(13433376-13433406)
[»] chr3 (9 HSPs)
chr3 (193-233)||(35870451-35870491)
chr3 (193-233)||(48266372-48266412)
chr3 (347-408)||(52350027-52350089)
chr3 (344-404)||(35870633-35870694)
chr3 (344-408)||(48266552-48266617)
chr3 (193-233)||(52349834-52349874)
chr3 (243-273)||(48266453-48266483)
chr3 (243-273)||(52349915-52349945)
chr3 (353-385)||(26215609-26215641)
[»] chr1 (10 HSPs)
chr1 (193-233)||(13786337-13786377)
chr1 (193-233)||(22912522-22912562)
chr1 (193-233)||(25807766-25807806)
chr1 (347-408)||(13786530-13786592)
chr1 (347-408)||(25807550-25807612)
chr1 (344-385)||(22912342-22912383)
chr1 (193-233)||(23726019-23726058)
chr1 (243-273)||(13786418-13786448)
chr1 (243-272)||(22912455-22912484)
chr1 (344-385)||(23725855-23725896)


Alignment Details
Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 49 - 178
Target Start/End: Original strand, 29455275 - 29455407
Alignment:
Q  49 gtgtctcctaatattgtcagttacacataattacaaatacatg--tgcggctgacatttgtaactcccatttacaaccc-nnnnnnntcatttccttaat 145  Q
    |||||||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||||||||||||||        |||||||||||||    
T  29455275 gtgtctcctaatattgtcagttacacatatatacaaatacatgtatgcggctgacatttgtaactcccatttacaacccaaaaaaaatcatttccttaat 29455374  T
Q  146 ttttgattaataattgacaacacttattatatg 178  Q
    ||||||||||||||||| |||||||||||||||    
T  29455375 ttttgattaataattgataacacttattatatg 29455407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 193 - 273
Target Start/End: Original strand, 29455477 - 29455557
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctcttcannnnnnnctaagcttatatatatgttgcttatgttatc 273  Q
    ||||||||||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||||    
T  29455477 gttacattttaaaattattcatattcttaattaatcctcttcatttttttctaagcttatatatatgttgcttatgttatc 29455557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 193 - 273
Target Start/End: Original strand, 43564267 - 43564347
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctcttcannnnnnnctaagcttatatatatgttgcttatgttatc 273  Q
    |||||||||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||    
T  43564267 gttacattttaaaattattcatattcttaatcaatccttttcatttttttctaagcttatatatatgttgcttatgttatc 43564347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 43564151 - 43564196
Alignment:
Q  133 tcatttccttaatttttgattaataattgacaacacttattatatg 178  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  43564151 tcattaccttaatttttgattaataattgacaacacttattatatg 43564196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 7574125 - 7574085
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7574125 gttacattttaaaattattcatattcttaatcaatcctctt 7574085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 41646742 - 41646702
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  41646742 gttacattttaaaattattcatattcttaatcaatcctctt 41646702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 347 - 408
Target Start/End: Complemental strand, 7573932 - 7573870
Alignment:
Q  347 tatttatataatatttcgtattctctaatggatat-ttttatttgatttgaaatacacaggtt 408  Q
    ||||| |||||| |||||||||||||||||||||| |||| |||||||| |||||||||||||    
T  7573932 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 7573870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 347 - 408
Target Start/End: Complemental strand, 16668527 - 16668465
Alignment:
Q  347 tatttatataatatttcgtattctctaatggatat-ttttatttgatttgaaatacacaggtt 408  Q
    ||||| |||||| |||||||||||||||||||||| |||| |||||||| |||||||||||||    
T  16668527 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 16668465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 408
Target Start/End: Complemental strand, 41646557 - 41646492
Alignment:
Q  344 ttctatttatataatatttcgtattctctaatggatat-ttttatttgatttgaaatacacaggtt 408  Q
    |||||||| |||||| ||||||||| |||||||||||| |||| |||||||| |||||||||||||    
T  41646557 ttctatttctataatttttcgtattttctaatggatattttttctttgatttcaaatacacaggtt 41646492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 16668720 - 16668680
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  16668720 gttacattttaaaattattcatattcttgatcaatcctctt 16668680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 404
Target Start/End: Original strand, 43564418 - 43564478
Alignment:
Q  344 ttctatttatataatatttcgtattctctaatggatatttttatttgatttgaaatacaca 404  Q
    |||||||| |||||| ||||||||||||||||||||||||||  || |||| |||||||||    
T  43564418 ttctatttctataatttttcgtattctctaatggatattttttatttatttcaaatacaca 43564478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 273
Target Start/End: Complemental strand, 7574044 - 7574014
Alignment:
Q  243 ctaagcttatatatatgttgcttatgttatc 273  Q
    |||||||||||||||||||||||||||||||    
T  7574044 ctaagcttatatatatgttgcttatgttatc 7574014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 273
Target Start/End: Complemental strand, 16668639 - 16668609
Alignment:
Q  243 ctaagcttatatatatgttgcttatgttatc 273  Q
    |||||||||||||||||||||||||||||||    
T  16668639 ctaagcttatatatatgttgcttatgttatc 16668609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 29455611 - 29455652
Alignment:
Q  344 ttctatttatataatatttcgtattctctaatggatattttt 385  Q
    |||||||| |||||| ||||||||||||||||||||| ||||    
T  29455611 ttctatttctataatttttcgtattctctaatggataatttt 29455652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 10186641 - 10186705
Alignment:
Q  344 ttctatttatataatatttcgtattctctaatggatatttttatttgatttgaaatacacaggtt 408  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  10186641 ttctatttctataatatttcgtattctctaatggatatttttctttgatttcaaatacacaggtt 10186705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 193 - 273
Target Start/End: Complemental strand, 918989 - 918909
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctcttcannnnnnnctaagcttatatatatgttgcttatgttatc 273  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||| |||| |||||||||    
T  918989 gttacattttaaaattattcatattcttaatcaatcctcttcatttttttctaagcttatatatatattgcatatgttatc 918909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 4138604 - 4138668
Alignment:
Q  344 ttctatttatataatatttcgtattctctaatggatatttttatttgatttgaaatacacaggtt 408  Q
    |||||||| |||||||||||||||||||||||||||||||||  ||||||| |||||||||||||    
T  4138604 ttctatttctataatatttcgtattctctaatggatatttttcattgatttcaaatacacaggtt 4138668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 8150525 - 8150485
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  8150525 gttacattttaaaattattcatattcttaatcagtcctctt 8150485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 10186462 - 10186502
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  10186462 gttacattttaaaattgttcatattcttaatcaatcctctt 10186502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 918840 - 918799
Alignment:
Q  344 ttctatttatataatatttcgtattctctaatggatattttt 385  Q
    |||||||| |||||| ||||||||||||||||||||||||||    
T  918840 ttctatttctataatttttcgtattctctaatggatattttt 918799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 11428176 - 11428136
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  11428176 gttacattttaaaattattcatattcttagtcaatcatctt 11428136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 174
Target Start/End: Complemental strand, 919108 - 919075
Alignment:
Q  141 ttaatttttgattaataattgacaacacttatta 174  Q
    ||||||||||||| ||||||||||||||||||||    
T  919108 ttaatttttgattgataattgacaacacttatta 919075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 20172070 - 20172106
Alignment:
Q  197 cattttaaaattattcatattcttaatcaatcctctt 233  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  20172070 cattttaaaattattcatattcttagtcaatcatctt 20172106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 385
Target Start/End: Original strand, 20172253 - 20172285
Alignment:
Q  353 tataatatttcgtattctctaatggatattttt 385  Q
    |||||| ||||||||||||||||||||||||||    
T  20172253 tataatttttcgtattctctaatggatattttt 20172285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 344 - 408
Target Start/End: Complemental strand, 21632626 - 21632562
Alignment:
Q  344 ttctatttatataatatttcgtattctctaatggatatttttatttgatttgaaatacacaggtt 408  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  21632626 ttctatttctataatatttcgtattctctaatggatatttttctttgatttcaaatacacaggtt 21632562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 408
Target Start/End: Complemental strand, 34737648 - 34737583
Alignment:
Q  344 ttctatttatataatatttcgtattctctaatggatat-ttttatttgatttgaaatacacaggtt 408  Q
    |||||||| |||||| |||||||||||||||||||||| |||| |||||||| |||||||||||||    
T  34737648 ttctatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 34737583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 2505035 - 2504995
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2505035 gttacattttaaaattattcatattcttaatcaatcctctt 2504995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 46092411 - 46092451
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46092411 gttacattttaaaattattcatattcttaatcaatcctctt 46092451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 46134936 - 46134976
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46134936 gttacattttaaaattattcatattcttaatcaatcctctt 46134976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 53830539 - 53830499
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  53830539 gttacattttaaaattattcatattcttaatcaatcctctt 53830499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 347 - 408
Target Start/End: Complemental strand, 2504842 - 2504780
Alignment:
Q  347 tatttatataatatttcgtattctctaatggatat-ttttatttgatttgaaatacacaggtt 408  Q
    ||||| |||||| |||||||||||||||||||||| |||| |||||||| |||||||||||||    
T  2504842 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 2504780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 46092597 - 46092662
Alignment:
Q  344 ttctatttatataatatttcgtattctctaatggata-tttttatttgatttgaaatacacaggtt 408  Q
    |||||||| |||||| |||||||||||||||| |||| ||||| |||||||| |||||||||||||    
T  46092597 ttctatttctataatttttcgtattctctaatagatattttttctttgatttcaaatacacaggtt 46092662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 404
Target Start/End: Complemental strand, 53830355 - 53830294
Alignment:
Q  344 ttctatttatataatatttcgtattctctaatggatat-ttttatttgatttgaaatacaca 404  Q
    |||||||| |||||| |||||||||||||||||||||| |||| |||||||| |||||||||    
T  53830355 ttctatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacaca 53830294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 20036391 - 20036431
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  20036391 gttacattttaaaattaatcatattcttaatcaatcctctt 20036431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 34737833 - 34737793
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  34737833 gttacattttaaaattattcatattcttgatcaatcctctt 34737793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 404
Target Start/End: Original strand, 21803195 - 21803242
Alignment:
Q  357 atatttcgtattctctaatggatatttttatttgatttgaaatacaca 404  Q
    |||||||||||||||||||| |||||||| |||||||| |||||||||    
T  21803195 atatttcgtattctctaatgaatatttttctttgatttcaaatacaca 21803242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 5430821 - 5430861
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  5430821 gttacattttaaaattattcatattcttagtcaatcatctt 5430861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 273
Target Start/End: Complemental strand, 2504954 - 2504924
Alignment:
Q  243 ctaagcttatatatatgttgcttatgttatc 273  Q
    |||||||||||||||||||||||||||||||    
T  2504954 ctaagcttatatatatgttgcttatgttatc 2504924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 273
Target Start/End: Complemental strand, 34737755 - 34737725
Alignment:
Q  243 ctaagcttatatatatgttgcttatgttatc 273  Q
    |||||||||||||||||||||||||||||||    
T  34737755 ctaagcttatatatatgttgcttatgttatc 34737725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 273
Target Start/End: Original strand, 46092492 - 46092522
Alignment:
Q  243 ctaagcttatatatatgttgcttatgttatc 273  Q
    |||||||||||||||||||||||||||||||    
T  46092492 ctaagcttatatatatgttgcttatgttatc 46092522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 273
Target Start/End: Original strand, 46135017 - 46135047
Alignment:
Q  243 ctaagcttatatatatgttgcttatgttatc 273  Q
    |||||||||||||||||||||||||||||||    
T  46135017 ctaagcttatatatatgttgcttatgttatc 46135047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 273
Target Start/End: Complemental strand, 53830458 - 53830428
Alignment:
Q  243 ctaagcttatatatatgttgcttatgttatc 273  Q
    |||||||||||||||||||||||||||||||    
T  53830458 ctaagcttatatatatgttgcttatgttatc 53830428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 2500496 - 2500455
Alignment:
Q  344 ttctatttatataatatttcgtattctctaatggatattttt 385  Q
    |||||||| |||||| |||| |||||||||||||||||||||    
T  2500496 ttctatttctataatttttcatattctctaatggatattttt 2500455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 2500678 - 2500638
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    |||||||||||||||||||  ||||||| ||||||||||||    
T  2500678 gttacattttaaaattatttgtattcttgatcaatcctctt 2500638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 385
Target Start/End: Original strand, 5431007 - 5431039
Alignment:
Q  353 tataatatttcgtattctctaatggatattttt 385  Q
    |||||| ||||||||||||||||||||||||||    
T  5431007 tataatttttcgtattctctaatggatattttt 5431039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 408
Target Start/End: Complemental strand, 21604921 - 21604856
Alignment:
Q  344 ttctatttatataatatttcgtattctctaatggatat-ttttatttgatttgaaatacacaggtt 408  Q
    |||||||| |||||| |||||||||||||||||||||| |||| |||||||| |||||||||||||    
T  21604921 ttctatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 21604856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 408
Target Start/End: Complemental strand, 37301755 - 37301690
Alignment:
Q  344 ttctatttatataatatttcgtattctctaatggatat-ttttatttgatttgaaatacacaggtt 408  Q
    |||||||| |||||| |||||||||||||||||||||| |||| |||||||| |||||||||||||    
T  37301755 ttctatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 37301690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 36991151 - 36991191
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36991151 gttacattttaaaattattcatattcttaatcaatcctctt 36991191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 21605101 - 21605061
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  21605101 gttaaattttaaaattattcatattcttaatcaatcctctt 21605061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 37302022 - 37301986
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcc 229  Q
    |||||||||||||||||||||||||||||||||||||    
T  37302022 gttacattttaaaattattcatattcttaatcaatcc 37301986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 36991339 - 36991404
Alignment:
Q  344 ttctatttatataatatttcgtattctctaatggata-tttttatttgatttgaaatacacaggtt 408  Q
    |||||||| |||||| ||| |||||||||||| |||| ||||| |||||||| |||||||||||||    
T  36991339 ttctatttctataattttttgtattctctaatagatattttttctttgatttcaaatacacaggtt 36991404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 273
Target Start/End: Original strand, 36991232 - 36991262
Alignment:
Q  243 ctaagcttatatatatgttgcttatgttatc 273  Q
    |||||||||||||||||||||||||||||||    
T  36991232 ctaagcttatatatatgttgcttatgttatc 36991262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 3355 - 3395
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3355 gttacattttaaaattattcatattcttaatcaatcctctt 3395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 5768098 - 5768058
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5768098 gttacattttaaaattattcatattcttaatcaatcctctt 5768058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 25419609 - 25419569
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25419609 gttacattttaaaattattcatattcttaatcaatcctctt 25419569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 39066904 - 39066864
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39066904 gttacattttaaaattattcatattcttaatcaatcctctt 39066864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 47233856 - 47233816
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  47233856 gttacattttaaaattattcatattcttaatcaatcctctt 47233816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 347 - 408
Target Start/End: Complemental strand, 25419416 - 25419354
Alignment:
Q  347 tatttatataatatttcgtattctctaatggatat-ttttatttgatttgaaatacacaggtt 408  Q
    ||||| |||||| |||||||||||||||||||||| |||| |||||||| |||||||||||||    
T  25419416 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 25419354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 273
Target Start/End: Complemental strand, 5768017 - 5767987
Alignment:
Q  243 ctaagcttatatatatgttgcttatgttatc 273  Q
    |||||||||||||||||||||||||||||||    
T  5768017 ctaagcttatatatatgttgcttatgttatc 5767987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 273
Target Start/End: Complemental strand, 25419528 - 25419498
Alignment:
Q  243 ctaagcttatatatatgttgcttatgttatc 273  Q
    |||||||||||||||||||||||||||||||    
T  25419528 ctaagcttatatatatgttgcttatgttatc 25419498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 408
Target Start/End: Complemental strand, 47233672 - 47233607
Alignment:
Q  344 ttctatttatataatatttcgtattctctaatggatat-ttttatttgatttgaaatacacaggtt 408  Q
    |||||||| |||||  |||| ||||||||||||||||| |||| |||||||| ||| |||||||||    
T  47233672 ttctatttctataacttttcatattctctaatggatattttttctttgatttcaaagacacaggtt 47233607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 44393780 - 44393816
Alignment:
Q  197 cattttaaaattattcatattcttaatcaatcctctt 233  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  44393780 cattttaaaattattcatattcttagtcaatcatctt 44393816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 385
Target Start/End: Original strand, 44393964 - 44393996
Alignment:
Q  353 tataatatttcgtattctctaatggatattttt 385  Q
    |||||| ||||||||||||||||||||||||||    
T  44393964 tataatttttcgtattctctaatggatattttt 44393996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 13433487 - 13433447
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13433487 gttacattttaaaattattcatattcttaatcaatcctctt 13433447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 347 - 408
Target Start/End: Complemental strand, 13433294 - 13433232
Alignment:
Q  347 tatttatataatatttcgtattctctaatggatat-ttttatttgatttgaaatacacaggtt 408  Q
    ||||| |||||| |||||||||||||||||||||| |||| |||||||| |||||||||||||    
T  13433294 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 13433232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 16712143 - 16712103
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  16712143 gttacattttaaaattattcatattcttaatcaatcatctt 16712103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 273
Target Start/End: Complemental strand, 13433406 - 13433376
Alignment:
Q  243 ctaagcttatatatatgttgcttatgttatc 273  Q
    |||||||||||||||||||||||||||||||    
T  13433406 ctaagcttatatatatgttgcttatgttatc 13433376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 35870451 - 35870491
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35870451 gttacattttaaaattattcatattcttaatcaatcctctt 35870491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 48266372 - 48266412
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48266372 gttacattttaaaattattcatattcttaatcaatcctctt 48266412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 347 - 408
Target Start/End: Original strand, 52350027 - 52350089
Alignment:
Q  347 tatttatataatatttcgtattctctaatggata-tttttatttgatttgaaatacacaggtt 408  Q
    ||||| |||||| ||||||||||||||||||||| ||||| |||||||| |||||||||||||    
T  52350027 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 52350089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 404
Target Start/End: Original strand, 35870633 - 35870694
Alignment:
Q  344 ttctatttatataatatttcgtattctctaatggata-tttttatttgatttgaaatacaca 404  Q
    |||||||| |||||| ||||||||||||||||||||| ||||| |||||||| |||||||||    
T  35870633 ttctatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacaca 35870694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 48266552 - 48266617
Alignment:
Q  344 ttctatttatataatatttcgtattctctaatggata-tttttatttgatttgaaatacacaggtt 408  Q
    |||||||| |||||| |||| |||||||||||||||| ||||| |||||||| |||||||||||||    
T  48266552 ttctatttctataatttttcatattctctaatggatattttttctttgatttcaaatacacaggtt 48266617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 52349834 - 52349874
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  52349834 gttacattttaaaattatttatattcttaatcaatcctctt 52349874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 273
Target Start/End: Original strand, 48266453 - 48266483
Alignment:
Q  243 ctaagcttatatatatgttgcttatgttatc 273  Q
    |||||||||||||||||||||||||||||||    
T  48266453 ctaagcttatatatatgttgcttatgttatc 48266483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 273
Target Start/End: Original strand, 52349915 - 52349945
Alignment:
Q  243 ctaagcttatatatatgttgcttatgttatc 273  Q
    |||||||||||||||||||||||||||||||    
T  52349915 ctaagcttatatatatgttgcttatgttatc 52349945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 385
Target Start/End: Original strand, 26215609 - 26215641
Alignment:
Q  353 tataatatttcgtattctctaatggatattttt 385  Q
    |||||| ||||||||||||||||||||||||||    
T  26215609 tataatttttcgtattctctaatggatattttt 26215641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 13786337 - 13786377
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13786337 gttacattttaaaattattcatattcttaatcaatcctctt 13786377  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 22912562 - 22912522
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22912562 gttacattttaaaattattcatattcttaatcaatcctctt 22912522  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 25807806 - 25807766
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25807806 gttacattttaaaattattcatattcttaatcaatcctctt 25807766  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 347 - 408
Target Start/End: Original strand, 13786530 - 13786592
Alignment:
Q  347 tatttatataatatttcgtattctctaatggata-tttttatttgatttgaaatacacaggtt 408  Q
    ||||| |||||| ||||||||||||||||||||| ||||| |||||||| |||||||||||||    
T  13786530 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 13786592  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 347 - 408
Target Start/End: Complemental strand, 25807612 - 25807550
Alignment:
Q  347 tatttatataatatttcgtattctctaatggatat-ttttatttgatttgaaatacacaggtt 408  Q
    ||||| |||||| |||||||||||||||||||||| |||| |||||||| |||||||||||||    
T  25807612 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 25807550  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 22912383 - 22912342
Alignment:
Q  344 ttctatttatataatatttcgtattctctaatggatattttt 385  Q
    |||||||| |||||| ||||||||||||||||||||||||||    
T  22912383 ttctatttctataatttttcgtattctctaatggatattttt 22912342  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 23726058 - 23726019
Alignment:
Q  193 gttacattttaaaattattcatattcttaatcaatcctctt 233  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  23726058 gttacattttaaa-ttattcatattcttaatcaatcctctt 23726019  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 273
Target Start/End: Original strand, 13786418 - 13786448
Alignment:
Q  243 ctaagcttatatatatgttgcttatgttatc 273  Q
    |||||||||||||||||||||||||||||||    
T  13786418 ctaagcttatatatatgttgcttatgttatc 13786448  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 272
Target Start/End: Complemental strand, 22912484 - 22912455
Alignment:
Q  243 ctaagcttatatatatgttgcttatgttat 272  Q
    ||||||||||||||||||||||||||||||    
T  22912484 ctaagcttatatatatgttgcttatgttat 22912455  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 23725896 - 23725855
Alignment:
Q  344 ttctatttatataatatttcgtattctctaatggatattttt 385  Q
    |||||||| |||||| ||| ||||||||||||||||||||||    
T  23725896 ttctatttctataattttttgtattctctaatggatattttt 23725855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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