View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4427_low_9 (Length: 415)
Name: NF4427_low_9
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4427_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 41035154 - 41035570
Alignment:
| Q |
1 |
taaaccactcttgaatcgcgaccattttaagctgttaggggacaaaaagatttcaagagtttatattgttaatctccctaattcgttatgcatgtacatg |
100 |
Q |
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|||| |||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41035154 |
taaatcactcttgaatctctaccattttaagcttttaggggacaaaaagatttcaagagtttatatttttaatctccctaattcgttatgcatgtacatg |
41035253 |
T |
|
| Q |
101 |
taacgagtctcacatgtaatatcaactaatgatttgttcatcaacaatcgacattactcactttactatataattgagttgcttgcgttagagaagctg- |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41035254 |
taacgagtctcacatgtaatatcaactaatgatttgttcatcaacaatcgacattactcactttactatataattgagttgctcgcgttagagaagctgg |
41035353 |
T |
|
| Q |
200 |
------------gaccctctatgtagataaaatcaaaatcaactgaa-----nnnnnnnnnnatgtttaaacagctatgctgaccggctggatgcaaagt |
282 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| |
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| T |
41035354 |
accattgaattagaccctctatgtagataaaatcaaaatcaactgaatttttttttttttttatgtttaaacagctatgctgaccagcttgatgcaaagt |
41035453 |
T |
|
| Q |
283 |
tgcaaacttgtaactacagaactaagttgatacaaaatttactgtacaagtaatttacaagaaaacagcaggagaggaaaccaaactatatacagtatac |
382 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41035454 |
tgcaaacttgtaactacagaactgagttgatacaaaatttactgtacaagtaatttacaagaaaacagcaggagaggaaaccaaactatatacagtatac |
41035553 |
T |
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| Q |
383 |
actaagtaaaattctac |
399 |
Q |
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||||||||||||||||| |
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| T |
41035554 |
actaagtaaaattctac |
41035570 |
T |
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