View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4428_high_2 (Length: 256)
Name: NF4428_high_2
Description: NF4428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4428_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 5789824 - 5789946
Alignment:
| Q |
1 |
aataagaagtagtaatctacatttgtttcttgttcaaagtttgataaccatagttgataatgttaccaagaaaaatccaactatagccacacaaatatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5789824 |
aataagaagtagtaatctacatttgtttcttgttcatagtttgataaccatagttgataatgttaccaagaaaaatccaactatagccacacaaatatga |
5789923 |
T |
|
| Q |
101 |
acaaaaatatagacttggttgtt |
123 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
5789924 |
acaaaaatatagacttggttgtt |
5789946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 145 - 243
Target Start/End: Original strand, 5789975 - 5790074
Alignment:
| Q |
145 |
tgtggatgagaagagggaatcc-tgaacttgtccaaaaccacaaaccaaaggggaaccctactgttaaactctgacgttgcactttctgtcttttcctct |
243 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5789975 |
tgtggatgagaagagggaatccctgaacttgtccaaaaccacaaaccaaaggggaaccctactgttaaactctgacgttgcactttctgtcttttcctct |
5790074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University