View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4428_low_1 (Length: 597)
Name: NF4428_low_1
Description: NF4428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4428_low_1 |
 | |
|
| [»] scaffold0175 (2 HSPs) |
| | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 6575168 - 6575556
Alignment:
| Q |
1 |
gtttcatacaatataacaactcagaacgatctttcattaaaaatacccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6575168 |
gtttcatacaatataacaactcagaacgatctttcattaaaaatacccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaa |
6575267 |
T |
|
| Q |
101 |
ggtagaaggaacacgattaggaccccaaatatcagaatgaacaacatcaaagggagccatatctctattattaatacgattagaaaaagagactctaaca |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6575268 |
ggtagaaggaacacgactaggaccccaaatatcagaatgaacaacatcaaagggagccatagctctattattaatacgattagaaaaagagactctaaca |
6575367 |
T |
|
| Q |
201 |
tgttttcctaattgacaagactcgcactgtaaatactctaaatg-ggaagaccatacactatcttcttcaattttgattgacttgatgatacccagacaa |
299 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6575368 |
tgtttttctaattgacaagactcgcactgtaaatactccaactgaggaagaccatacactatcttcttcaattttgatagacttgatgatacccagacaa |
6575467 |
T |
|
| Q |
300 |
cctttgagtcttctgctcttgtttctaattccaatgaccgtggtagtggagttcttggatatggtcaaggccggggacgttgttaaggg |
388 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
6575468 |
cctctgagtcttctgctcttgtttctaattccaatgaccgtggtagtggagttcgtggacgtggtcaaggccggggacgttgttaaggg |
6575556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 8194608 - 8194718
Alignment:
| Q |
32 |
tttcattaaaaatacccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattaggaccccaaata |
131 |
Q |
| |
|
|||||| |||||||||||||||||||| || || |||||||||||||||||| |||| | ||||| || ||| |||||| |||||||||||||| |
|
|
| T |
8194608 |
tttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaacaaaatattgataacccaaacatgaaacaacacggctaggaccccaaata |
8194707 |
T |
|
| Q |
132 |
tcagaatgaac |
142 |
Q |
| |
|
||||||||||| |
|
|
| T |
8194708 |
tcagaatgaac |
8194718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 36998631 - 36998525
Alignment:
| Q |
47 |
ccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattaggaccccaaatatcagaatgaacaaca |
146 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||||||||| |||| ||||| ||||||| | ||| ||||||||||||||||| |||| |||| | |
|
|
| T |
36998631 |
ccaagtacatcgcgagaaatcatcgatgaaagtaacataatacctgtatcctaaattagaaggcatgcgactaggaccccaaatatcaaaatgcacaata |
36998532 |
T |
|
| Q |
147 |
tcaaagg |
153 |
Q |
| |
|
|| |||| |
|
|
| T |
36998531 |
tcgaagg |
36998525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0175 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 284
Target Start/End: Complemental strand, 32145 - 31878
Alignment:
| Q |
15 |
aacaactcagaacgatctttcattaaaaatacccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacac |
114 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32145 |
aacaactcagaatgatctttcattaaaaatacccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaaaac |
32046 |
T |
|
| Q |
115 |
gattaggaccccaaatatcagaatgaacaacatcaaagggagccatatctctattattaatacgattagaaaaagagactctaacatgttttcctaattg |
214 |
Q |
| |
|
|| |||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||| |||||||||||| |
|
|
| T |
32045 |
gactaggaccccaaacatcaaaatgaacaacatcaaagggagccataactctattattaatacggttagaaaaagaaactctaacatattttcctaattg |
31946 |
T |
|
| Q |
215 |
acaagactcgcactgtaaatactctaaatg-ggaagaccatacactatcttcttcaattttgattgacttg |
284 |
Q |
| |
|
||||||||||||| ||||| ||||||| || ||||||||| |||| | |||||||||||||| |||||| |
|
|
| T |
31945 |
acaagactcgcaccgtaaagactctaactgaggaagaccagacac---catcttcaattttgatagacttg |
31878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0175; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 283 - 578
Target Start/End: Original strand, 31085 - 31398
Alignment:
| Q |
283 |
tgatgatacccagacaacctttgagtcttctgctcttgtttctaattccaatgaccgtggtagtggagttcttggatatggtcaaggccggggac----- |
377 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| | || |||| |||||||||||| |||| |
|
|
| T |
31085 |
tgatgatacctagacaacctctgagtcttctgctcttatttcttattccaatgaccgtggtagtggtggtcgtggacgtggtcaaggccgtggacatggt |
31184 |
T |
|
| Q |
378 |
-------------gttgttaagggggtagaggtacccattgtacttattgtaagagagatggacacactcaagaccggtgctacaacttgcatggttttc |
464 |
Q |
| |
|
|| || ||||||||||||||| || || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31185 |
caaggtcggggatgtggtaaagggggtagaggtagccgttctacttaatgtaagagagatggacacactcaagaccggtgctacaacttgcatggttatc |
31284 |
T |
|
| Q |
465 |
cgaacaaaagtgctaatgttgctcaatcctctacaaactctgagtcaaaggctgatcaggaaactacaatttctgccaatgagtataaggagtatttaca |
564 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31285 |
cgaacaaaagtgctaatgttgctcaatcctctacaaactctgagtcaaaggctgatcaggaaactacaatttctgccaatgagtataaggagtatttaca |
31384 |
T |
|
| Q |
565 |
actgaaggcagcac |
578 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
31385 |
actaaaggcagcac |
31398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 13327372 - 13327464
Alignment:
| Q |
47 |
ccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattaggaccccaaatatcagaatg |
139 |
Q |
| |
|
|||||| |||| |||||||||||| || ||||||||||||||||||| ||||| |||| || ||| |||||||||||||||||||| |||| |
|
|
| T |
13327372 |
ccaagtccatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgattaggaccccaaatatcataatg |
13327464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 32 - 142
Target Start/End: Complemental strand, 12895595 - 12895485
Alignment:
| Q |
32 |
tttcattaaaaatacccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattaggaccccaaata |
131 |
Q |
| |
|
||||||||| |||||||||||||||| ||| |||||||||||||| || ||| | || ||||||||| || || ||||||| |||||||||||| | |
|
|
| T |
12895595 |
tttcattaagaatacccaagtacatcgtgaaaaatcatcaataaacgttacaaagtaagagtaacctaaagttgactcaacacgactaggaccccaaaca |
12895496 |
T |
|
| Q |
132 |
tcagaatgaac |
142 |
Q |
| |
|
|| |||||||| |
|
|
| T |
12895495 |
tctgaatgaac |
12895485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 33832557 - 33832451
Alignment:
| Q |
47 |
ccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattaggaccccaaatatcagaatgaacaaca |
146 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||||||| |||| ||||| |||| ||||| | |||||||||||||||||||||| |||| | |
|
|
| T |
33832557 |
ccaagtacatcgcgagaaatcatcgataaatgtaacataatacctgtatcctaaattagagggaacgtggctaggaccccaaatatcagaatgcacaata |
33832458 |
T |
|
| Q |
147 |
tcaaagg |
153 |
Q |
| |
|
|| |||| |
|
|
| T |
33832457 |
tcgaagg |
33832451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 47 - 153
Target Start/End: Original strand, 37919222 - 37919328
Alignment:
| Q |
47 |
ccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattaggaccccaaatatcagaatgaacaaca |
146 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||||||| |||| ||||| |||| |||| || || ||||||||||||||||||| |||| | |
|
|
| T |
37919222 |
ccaagtacatcgcgagaaatcatcgataaatgtaacataatacctgtatcctaaattagagagaacgcggctacgaccccaaatatcagaatgcacaata |
37919321 |
T |
|
| Q |
147 |
tcaaagg |
153 |
Q |
| |
|
|| |||| |
|
|
| T |
37919322 |
tcgaagg |
37919328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 20704887 - 20704820
Alignment:
| Q |
21 |
tcagaacgatctttcattaaaaatacccaagtacatcttgagaaatcatcaataaaagtaacataata |
88 |
Q |
| |
|
||||| || ||||||||||| || |||||||||||||| || || ||||||||||| |||||| |||| |
|
|
| T |
20704887 |
tcagatcgttctttcattaagaaaacccaagtacatctagaaaattcatcaataaaggtaacaaaata |
20704820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 14796720 - 14796667
Alignment:
| Q |
24 |
gaacgatctttcattaaaaatacccaagtacatcttgagaaatcatcaataaaa |
77 |
Q |
| |
|
||||||| ||||||||| | || ||||||||||| ||| ||||||||||||||| |
|
|
| T |
14796720 |
gaacgatttttcattaacagtaaccaagtacatcgtgaaaaatcatcaataaaa |
14796667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 36498490 - 36498381
Alignment:
| Q |
47 |
ccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattaggaccccaaatatcagaatgaacaaca |
146 |
Q |
| |
|
|||||| ||||| |||||||||||||| ||||| |||||||| ||||| || || ||||| | |||||| |||||||||||| ||||||||| | | | |
|
|
| T |
36498490 |
ccaagtgcatctagagaaatcatcaatgaaagtgacataatatttgtatcccaaagtagacgacacacgactaggaccccaaacatcagaatggatgata |
36498391 |
T |
|
| Q |
147 |
tcaaagggag |
156 |
Q |
| |
|
|||||||||| |
|
|
| T |
36498390 |
tcaaagggag |
36498381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 151
Target Start/End: Original strand, 35002361 - 35002465
Alignment:
| Q |
47 |
ccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattaggaccccaaatatcagaatgaacaaca |
146 |
Q |
| |
|
|||||| ||||| |||||||||||||| ||| |||||||||| |||| ||||| | | || ||| || |||||||||||| |||| ||||||||| | |
|
|
| T |
35002361 |
ccaagtgcatctcgagaaatcatcaatgaaactaacataatatctgtatcctaaataatagggtacatgactaggaccccaaacatcataatgaacaata |
35002460 |
T |
|
| Q |
147 |
tcaaa |
151 |
Q |
| |
|
||||| |
|
|
| T |
35002461 |
tcaaa |
35002465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 27821891 - 27822010
Alignment:
| Q |
24 |
gaacgatctttcattaaaa-atacccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattagga |
122 |
Q |
| |
|
||||||| ||||||||||| |||| ||||||||||| || || |||||||||||||||||| |||| | ||||| || ||| ||||||| ||||| |
|
|
| T |
27821891 |
gaacgatttttcattaaaatatactcaagtacatctagaaaagtcatcaataaaagtaacaaaatattgataacccaaacatgaaacaacacgactagga |
27821990 |
T |
|
| Q |
123 |
ccccaaatatcagaatgaac |
142 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
27821991 |
ccccaaatatcaaaatgaac |
27822010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 22162928 - 22162979
Alignment:
| Q |
32 |
tttcattaaaaatacccaagtacatcttgagaaatcatcaataaaagtaaca |
83 |
Q |
| |
|
|||||| |||||||||||||||||||| || || |||||||||||||||||| |
|
|
| T |
22162928 |
tttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaaca |
22162979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 6998474 - 6998372
Alignment:
| Q |
54 |
catcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattaggaccccaaatatcagaatgaacaacatcaaagg |
153 |
Q |
| |
|
||||| || ||||||||||| ||||| |||||||| ||||| || || ||||| || ||| |||||||||| | |||||||||||||| |||||||| |
|
|
| T |
6998474 |
catctagaaaaatcatcaatgaaagtgacataatatttgtatcccaaagtagacatcacccgactaggaccccacacatcagaatgaacaatatcaaagg |
6998375 |
T |
|
| Q |
154 |
gag |
156 |
Q |
| |
|
||| |
|
|
| T |
6998374 |
gag |
6998372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 42359665 - 42359752
Alignment:
| Q |
54 |
catcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattaggaccccaaatatcagaatgaa |
141 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||||| ||||| || || ||||| | || ||| | |||||||||| ||||||||||| |
|
|
| T |
42359665 |
catctagagaaatcatcaatgaaagtgacataatatttgtatcccaaagtagacgacacgcgactgggaccccaaacatcagaatgaa |
42359752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 7926984 - 7926882
Alignment:
| Q |
54 |
catcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattaggaccccaaatatcagaatgaacaacatcaaagg |
153 |
Q |
| |
|
||||| || ||||||||||| ||||| |||||||| | || || || ||||| | || ||| |||||||||| | |||||||||||||| |||||||| |
|
|
| T |
7926984 |
catctagaaaaatcatcaatgaaagtgacataatatctatatcccaaagtagacagcacccgactaggaccccatacatcagaatgaacaatatcaaagg |
7926885 |
T |
|
| Q |
154 |
gag |
156 |
Q |
| |
|
||| |
|
|
| T |
7926884 |
gag |
7926882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 32665554 - 32665639
Alignment:
| Q |
54 |
catcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgattaggaccccaaatatcagaatg |
139 |
Q |
| |
|
||||| |||||||||||| | ||||| |||||||| ||||| || || ||||| | |||||| |||||||||||| ||||||||| |
|
|
| T |
32665554 |
catctagagaaatcatcattgaaagtgacataatatttgtatcccaaagtagacgacacacgactaggaccccaaacatcagaatg |
32665639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 345
Target Start/End: Original strand, 23738586 - 23738648
Alignment:
| Q |
283 |
tgatgatacccagacaacctttgagtcttctgctcttgtttctaattccaatgaccgtggtag |
345 |
Q |
| |
|
||||||||||||||||||| ||| ||| | |||| |||||||| | |||||||| |||||||| |
|
|
| T |
23738586 |
tgatgatacccagacaacccttgggtcctttgcttttgtttctgactccaatgatcgtggtag |
23738648 |
T |
|
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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 43011 - 43064
Alignment:
| Q |
24 |
gaacgatctttcattaaaaatacccaagtacatcttgagaaatcatcaataaaa |
77 |
Q |
| |
|
||||||| ||||||||| | || ||||||||||| ||| ||||||||||||||| |
|
|
| T |
43011 |
gaacgatttttcattaacagtaaccaagtacatcgtgaaaaatcatcaataaaa |
43064 |
T |
|
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