View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4428_low_2 (Length: 361)
Name: NF4428_low_2
Description: NF4428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4428_low_2 |
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| [»] scaffold0176 (2 HSPs) |
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Alignment Details
Target: scaffold0176 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 31672 - 31853
Alignment:
| Q |
18 |
tatatagctatatagccatagcttttcatgaaatttgatttataaggtttaatattatgaactagtatgtgttattttgagctaagttttaatcatattt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31672 |
tatatagctatatagccatagcttttcatgaaatttgatttataaggtttaatattatgaactagtatgtgttattttgagctaagttttaatcatattt |
31771 |
T |
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| Q |
118 |
caattttatactttttctgcagtgatattgttagcatggttgcatatgcaccactctttttaaacacaaacgacagaaagta |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31772 |
caattttatactttttctgcagtgatattgttagcatggttgcatatgcaccactctttttaaacacaaacgacagaaagta |
31853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 31919 - 32006
Alignment:
| Q |
264 |
gtaaaagatagagatgattatttaatctannnnnnnatcaaaataggtggataccagatgcaattgtttttaactcttatcagaattat |
352 |
Q |
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| T |
31919 |
gtaaaagatagagatgattatttaatctatttttc-atcaaaataggtggataccagatgcaattgtttttaactcttatcagaattat |
32006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 34164851 - 34165032
Alignment:
| Q |
18 |
tatatagctatatagccatagcttttcatgaaatttgatttataaggtttaatattatgaactagtatgtgttattttgagctaagttttaatcatattt |
117 |
Q |
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| T |
34164851 |
tatatagctatatagccatagcttttcatgaaatttgatttataaggtttaatattatgaactagtatgtgttattttgagctaagttttaatcatattt |
34164950 |
T |
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| Q |
118 |
caattttatactttttctgcagtgatattgttagcatggttgcatatgcaccactctttttaaacacaaacgacagaaagta |
199 |
Q |
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| T |
34164951 |
caattttatactttttctgcagtgatattgttagcatggttgcatatgcaccactctttttaaacacaaacgacagaaagta |
34165032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 34171348 - 34171529
Alignment:
| Q |
18 |
tatatagctatatagccatagcttttcatgaaatttgatttataaggtttaatattatgaactagtatgtgttattttgagctaagttttaatcatattt |
117 |
Q |
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| T |
34171348 |
tatatagctatatagccatagcttttcatgaaatttgatttataaggtttaatattatgaactagtatgtgttattttgagctaagttttaatcatattt |
34171447 |
T |
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| Q |
118 |
caattttatactttttctgcagtgatattgttagcatggttgcatatgcaccactctttttaaacacaaacgacagaaagta |
199 |
Q |
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| T |
34171448 |
caattttatactttttctgcagtgatattgttagcatggttgcatatgcaccactctttttaaacacaaacgacagaaagta |
34171529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 34214946 - 34215127
Alignment:
| Q |
18 |
tatatagctatatagccatagcttttcatgaaatttgatttataaggtttaatattatgaactagtatgtgttattttgagctaagttttaatcatattt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34214946 |
tatatagctatatagccatagcttttcatgaaatttgatttataaggtttaattttatgaactagtatgtgttattttgagctaagttttaatcatattt |
34215045 |
T |
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| Q |
118 |
caattttatactttttctgcagtgatattgttagcatggttgcatatgcaccactctttttaaacacaaacgacagaaagta |
199 |
Q |
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| T |
34215046 |
caattttatactttttctgcagtgatattgttagcaaggttgcatatgcaccactctttttaaacacaaacgacagaaagta |
34215127 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 34165098 - 34165185
Alignment:
| Q |
264 |
gtaaaagatagagatgattatttaatctannnnnnnatcaaaataggtggataccagatgcaattgtttttaactcttatcagaattat |
352 |
Q |
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|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34165098 |
gtaaaagatagagatgattatttaatctatttttc-atcaaaataggtggataccagatgcaattgtttttaactcttatcagaattat |
34165185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 34171595 - 34171682
Alignment:
| Q |
264 |
gtaaaagatagagatgattatttaatctannnnnnnatcaaaataggtggataccagatgcaattgtttttaactcttatcagaattat |
352 |
Q |
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| T |
34171595 |
gtaaaagatagagatgattatttaatctatttttc-atcaaaataggtggataccagatgcaattgtttttaactcttatcagaattat |
34171682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 34215192 - 34215279
Alignment:
| Q |
264 |
gtaaaagatagagatgattatttaatctannnnnnnatcaaaataggtggataccagatgcaattgtttttaactcttatcagaattat |
352 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34215192 |
gtaaaagataaagatgattatttaatctattttcc-atcaaaataggtggataccagatacaattgtttttaactcttatcagaattat |
34215279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 352
Target Start/End: Complemental strand, 38725304 - 38725269
Alignment:
| Q |
317 |
ccagatgcaattgtttttaactcttatcagaattat |
352 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
38725304 |
ccagacgcaattgtttttaactcttatcagaattat |
38725269 |
T |
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