View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4429-Insertion-1 (Length: 1088)
Name: NF4429-Insertion-1
Description: NF4429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4429-Insertion-1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 939; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 939; E-Value: 0
Query Start/End: Original strand, 9 - 1088
Target Start/End: Original strand, 33530990 - 33532074
Alignment:
| Q |
9 |
caaggtcaaattttggcattttctcgtaaattgtatatgcttcttgctgtcttaggagcttcaacaaggcttctgtttgtaaagcatagacctggtagac |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33530990 |
caaggtcaaattttggcattttctcgtaaattgtatatgcttcttgctgtcttaggagcttcaacaaggcttcagtttgtaaagcatagacctggtagac |
33531089 |
T |
|
| Q |
109 |
ataaccannnnnnnaatcagcataagagggttattggccaatgagttgagtaacatatgattnnnnnnnntgtaggagtgcctaaaataaaacatttaac |
208 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33531090 |
ataaccatttttttaatcagcataagagggttattggccaatgagttgagtaacatatgattaaaaaaaatgtaggagtgcctaaaataaaacatttaac |
33531189 |
T |
|
| Q |
209 |
caaagaaactaacctttggagctgaatccacacctaaggatattgcagactgtgtttccttcaatataactttccaatccttgactttcctggcctcact |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33531190 |
caaagaaactaacctttggagctgaatccacacctaaggatattgcagactgtgtttccttcaatataactttccaatccttgactttcctggcctcact |
33531289 |
T |
|
| Q |
309 |
gcatttgttaaagtgaacttgaagagcctgagcttggaaatcaagttccgaatcaaagtacggagtttctttattgcagttcaatgccttttctgcttct |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33531290 |
gcatttgttaaagtgaacttgaagagcctgagcttggaaatcaagttccgaatcaaagtacggagtttctttattgcagttcaatgccttttctgcttct |
33531389 |
T |
|
| Q |
409 |
cccaacctgcattaaaattttcaattctatnnnnnnncaataacacaaaaagaaacacaaccattaatataactaagtgattgagctcaagtaatagtgg |
508 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33531390 |
cccaacctgcattaaaattttcaattctataaaaaaacaataacacaaaaacaaacacaaccattaatataactaagtgattgagcccaagtaatagtgg |
33531489 |
T |
|
| Q |
509 |
gttttatttaattacaaattgattgggagttcccgagtttgaaccccgattgaaacaacttttggtccaacttaacttatctcccatccgaactccagat |
608 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33531490 |
gttttatttaattacaaattgattgggagttcccgagtttgaaccccgattgaaataacttttggtccgacttaacttatctcccatccgaactccagat |
33531589 |
T |
|
| Q |
609 |
taccagggtcacttcccctcttaattcagaggattaagacaggtatactatttaattgagtgaagcatattaagttattcatcattaacaagtacctgaa |
708 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33531590 |
taccagggtcacttcccctcttaattcagaggattaagaaaggtatactatttaattgagtgaagcatattaagttattcatcattaacaagtacctgaa |
33531689 |
T |
|
| Q |
709 |
gtatattgtcgccaaacggctatgagctctaggataagaagggtcaatcctaatagcttcctcacactcaacaattgcatgctgaaaccttcccaaacca |
808 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33531690 |
gtatattgtcgccaaacggctatgagctctaggataagaagggtcaatcctaatagcttcctcacactcaacaattgcatgctgaaaccttcccaaacca |
33531789 |
T |
|
| Q |
809 |
atcaaagcagcactcttgttacaatgataagttgccttattggaatcaatagcaatagctcgttcatacaaagccaaagcctcagaaaatcttccttgtt |
908 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33531790 |
atcaaagcagcactcttgttacaatgataagttgccttattggaatcaatagcaatagctcgttcatacaaagccaaagcctcagaaaatcttccttgtt |
33531889 |
T |
|
| Q |
909 |
tgtatgcttcatttcccattgattttaacacctca-ggtctagtattctgttgcttctaggacttcgaaattgtgacacaccatca-cac-tttcctcat |
1005 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
33531890 |
tgtatgcttcatttcccattgatttcaacacctcagggtctagtattctgttgcttctaggacttcgaaattgtgacacaccatcaccacttttcctcat |
33531989 |
T |
|
| Q |
1006 |
tatattccccattacactgttattcacagaacatgacacaagaatc-actctttattattccttgtaacacttg-tcttgggctg |
1088 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||| |||||||||| |
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| T |
33531990 |
tatattccccattacactgttattcacagaacatgacacagaattcaactctttattattccttgtaacacttgttcttgggctg |
33532074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 4e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 700 - 945
Target Start/End: Original strand, 26209619 - 26209864
Alignment:
| Q |
700 |
gtacctgaagtatattgtcgccaaacggctatgagctctaggataagaagggtcaatcctaatagcttcctcacactcaacaattgcatgctgaaacctt |
799 |
Q |
| |
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||||||||| |||||||| |||||||| | |||||||| ||||||||| || | || ||||| |||||||||||||| |||||| | ||||||||| |
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| T |
26209619 |
gtacctgaaatatattgttgccaaacgattgtgagctctgttataagaaggatccaaccgaatagattcctcacactcaataattgcttcttgaaacctt |
26209718 |
T |
|
| Q |
800 |
cccaaaccaatcaaagcagcactcttgttacaatgataagttgccttattggaatcaatagcaatagctcgttcatacaaagccaaagcctcagaaaatc |
899 |
Q |
| |
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|| || |||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||| ||| |
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| T |
26209719 |
cctaatccaatcaaagcagcactcttattgcaatgataagttgccttatttgaatcaatagcaattgctttgtcatacaaagccaaagcctcttcaaact |
26209818 |
T |
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| Q |
900 |
ttccttgtttgtatgcttcatttcccattgattttaacacctcagg |
945 |
Q |
| |
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| || | ||||||||||||||||||||||||||| ||||| ||||| |
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| T |
26209819 |
taccctttttgtatgcttcatttcccattgatttcaacacttcagg |
26209864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 209 - 353
Target Start/End: Original strand, 26209083 - 26209227
Alignment:
| Q |
209 |
caaagaaactaacctttggagctgaatccacacctaaggatattgcagactgtgtttccttcaatataactttccaatccttgactttcctggcctcact |
308 |
Q |
| |
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||||| ||||||||| |||||||||||| |||||||||||| |||||||||||||||||| | || ||| |||| || |||| |||||| || || | |
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| T |
26209083 |
caaaggaactaacctgtggagctgaatcggcacctaaggataatgcagactgtgtttcctttagtacaacactccattcattgaatttcctagcttctat |
26209182 |
T |
|
| Q |
309 |
gcatttgttaaagtgaacttgaagagcctgagcttggaaatcaag |
353 |
Q |
| |
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|||||| || | |||| ||| |||||||||||||| ||| |||| |
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| T |
26209183 |
gcatttcttcaggtgattttgtagagcctgagcttgaaaagcaag |
26209227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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