View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4429-Insertion-10 (Length: 528)
Name: NF4429-Insertion-10
Description: NF4429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4429-Insertion-10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 8 - 517
Target Start/End: Original strand, 26029927 - 26030432
Alignment:
| Q |
8 |
atgcaatggtcaggagttcgattgttggcttatgtgtaccgaaaaaattcagttgagagtggagaatcaaccttgtgtgtcctacatattctccgttaac |
107 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26029927 |
atgcaatgggcaggagttcgattgttggctcatgtgtaccgaaaaaattcggttgagagtagagaatcaaccttgtgtgtcctacatattctccgttaac |
26030026 |
T |
|
| Q |
108 |
aacattgtgtgtcccacatattctccaacggagagtagtcgctgtcacttagcaatagaaacttctttgtgtcaatattatggtaaaataaaaaagagat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26030027 |
aacattgtgtgtcccacatattctccaatggagattagtcgctgtcacttagcaatagaaacttctctgtgtcaatattatggtaaaataaaaaagagat |
26030126 |
T |
|
| Q |
208 |
aggtgaggattgttcacctagagtttaggaagtaaggattgatgagactgaactactctctaattaatgcatacaaacaattgattaatttatttatata |
307 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26030127 |
aggtgaggattgtttacctagagtttaagaag----gattgatgagagtgaactactctctaattaatgcatacaaacaattgattaatttatttatata |
26030222 |
T |
|
| Q |
308 |
acacttcttacttgtcctattaaataggttggacatgcacttcaatctgccatgcaagcaggagtggaaaggaaggatctattcatcacctccaagatat |
407 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26030223 |
acacttcttacttgtcctgctaaataggttggacatgcacttcaatctgccatgcaagcaggagtggaaaggaaggatctattcatcacctccaagatat |
26030322 |
T |
|
| Q |
408 |
ggtaataatgtaattacatatagaaacacgttaatacatatactctttaggtctttatgttgattcaattgaatttgatggtgtgaaattttatggctgc |
507 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26030323 |
ggtaataatgtaattacatatagagacatgttaatacatataatctttaggtctttatgttgattcaattgaatttgattgtgtgaaattttatggctgc |
26030422 |
T |
|
| Q |
508 |
tattctaggt |
517 |
Q |
| |
|
|||||||||| |
|
|
| T |
26030423 |
tattctaggt |
26030432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University