View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4429-Insertion-13 (Length: 299)
Name: NF4429-Insertion-13
Description: NF4429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4429-Insertion-13 |
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| [»] scaffold0187 (4 HSPs) |
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Alignment Details
Target: scaffold0187 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 279
Target Start/End: Original strand, 6942 - 7212
Alignment:
| Q |
9 |
gggggtctcaatttatatagtactaattattactaactaaacaccctttttgttaaactaagacaaaaggaatctgattcaaaccactagggtgagtcca |
108 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6942 |
gggggtctcagtttatatagtactaactattactaactaaacaccctttttgttaaactaagacaaaaggaatctgattcaaaccactagggtgagtcca |
7041 |
T |
|
| Q |
109 |
ttgttcatggtttaaacaagatcacgtggaactgtaaattatgatacaacttttgcataaggtacattttatatatgtggcccgattgtttctttgcttg |
208 |
Q |
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| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7042 |
atattcatggtttaaacaagatcacatggaactgtaaattatgatacaacttttgcaaaaggtacattttatatatgtggcccgattgtttctttgcttg |
7141 |
T |
|
| Q |
209 |
acttgatttgttatgtgattggtgttggttgtgtttttctttcaatgatgcatgtttatcggggtgggtag |
279 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7142 |
acttgatttgttatgtgattggttttggttgtgtttttctttcaatgatgcatgtttatcggggtgagtag |
7212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 279
Target Start/End: Original strand, 17270 - 17540
Alignment:
| Q |
9 |
gggggtctcaatttatatagtactaattattactaactaaacaccctttttgttaaactaagacaaaaggaatctgattcaaaccactagggtgagtcca |
108 |
Q |
| |
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|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17270 |
gggggtctcagtttatatagtactaactattactaactaaacaccctttttgttaaactaagacaaaaggaatctgattcaaaccactagggtgagtcca |
17369 |
T |
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| Q |
109 |
ttgttcatggtttaaacaagatcacgtggaactgtaaattatgatacaacttttgcataaggtacattttatatatgtggcccgattgtttctttgcttg |
208 |
Q |
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| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
17370 |
atattcatggtttaaacaagatcacatggaactgtaaattatgatacaacttttgcaaaaggtacattttatatatgtggcccgattgtttctttgcttg |
17469 |
T |
|
| Q |
209 |
acttgatttgttatgtgattggtgttggttgtgtttttctttcaatgatgcatgtttatcggggtgggtag |
279 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17470 |
acttgatttgttatgtgattggttttggttgtgtttttctttcaatgatgcatgtttatcggggtgagtag |
17540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 183 - 331
Alignment:
| Q |
9 |
gggggtctcaatttatatagtactaattattactaactaaacaccctttttgttaaactaagacaaaaggaatctgattcaaaccactagggtgagtcca |
108 |
Q |
| |
|
|||||||||| |||||||||||| ||||| |||||| |||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||| |
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| T |
183 |
gggggtctcagtttatatagtaccaattactactaa----acaccctttttgttaaacaaagacaa--ggaatcggattcaaaccactagggtgagtcca |
276 |
T |
|
| Q |
109 |
ttgttcatggtttaaacaagatcacgtggaactgtaaattatgatacaacttttg |
163 |
Q |
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| ||||||||||||||||| |||| |||||| |||||||||||| ||||||||| |
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| T |
277 |
atattcatggtttaaacaagttcacatggaacagtaaattatgattcaacttttg |
331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 27675 - 27791
Alignment:
| Q |
46 |
taaacaccctttttgttaaactaagacaaaaggaatctgattcaaaccactagggtgagtccattgttc--atggtttaaacaagatcacgtggaactgt |
143 |
Q |
| |
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|||||| ||||||||||||||| ||||||| |||||||||||||||||||| ||||| |||| | ||| ||||||||||||||||||| ||||||||| |
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| T |
27675 |
taaacaacctttttgttaaacttagacaaa-ggaatctgattcaaaccactggggtgtctccaatattcctatggtttaaacaagatcacatggaactgt |
27773 |
T |
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| Q |
144 |
aaattatgatacaacttt |
161 |
Q |
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|||||||||| ||||||| |
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| T |
27774 |
aaattatgattcaacttt |
27791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 9e-33; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 37855286 - 37855174
Alignment:
| Q |
9 |
gggggtctcaatttatatagtactaattattactaactaaacaccctttttgttaaactaagacaaaaggaatctgattcaaaccactagggtgagtcca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| ||| ||||||||||| |
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| T |
37855286 |
gggggtctcaatttatatagtactaattattactaa----acaccccttttgttaaactaagacaaagggaatctgattcaaacaactggggtgagtcca |
37855191 |
T |
|
| Q |
109 |
ttgttcatggtttaaac |
125 |
Q |
| |
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| ||||||||| |||| |
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| T |
37855190 |
atattcatggttcaaac |
37855174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 37911402 - 37911286
Alignment:
| Q |
46 |
taaacaccctttttgttaaactaagacaaaaggaatctgattcaaaccactagggtgagtccattgttc--atggtttaaacaagatcacgtggaactgt |
143 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| |||||||||||||||||||| ||||| |||| | ||| ||||||||||||||||||| ||||||||| |
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| T |
37911402 |
taaacaacctttttgttaaacttagacaaa-ggaatctgattcaaaccactggggtgtctccaatattcctatggtttaaacaagatcacatggaactgt |
37911304 |
T |
|
| Q |
144 |
aaattatgatacaacttt |
161 |
Q |
| |
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|||||||||| ||||||| |
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| T |
37911303 |
aaattatgattcaacttt |
37911286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 37881485 - 37881248
Alignment:
| Q |
13 |
gtctcaatttatatagtactaattattactaactaaacaccctttttgttaaactaagacaaaaggaatctgattcaaaccactagggtgagtccattgt |
112 |
Q |
| |
|
|||| |||||||||||||||||||| || | ||||||||||||| |||||||||||||| | |||||||||||||| ||| | ||||||| || | | |
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| T |
37881485 |
gtcttaatttatatagtactaatta---ctca-taaacaccctttt-gttaaactaagacagagggaatctgattcaacccattgaggtgagttcaatat |
37881391 |
T |
|
| Q |
113 |
tcatggtttaaacaagatcacgtggaactgtaaattatgatacaacttttgcataaggtacattttatatatgtggcccgattgtttctttgcttgactt |
212 |
Q |
| |
|
|| |||||||||||| ||| ||||||| |||||||| || ||||||||| | |||||||||| | ||||| ||||| |||||||| || ||||| |
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| T |
37881390 |
tcttggtttaaacaaactcatgtggaacattaaattatcattcaacttttggactaggtacattt----tttgtggtccgatggtttcttt-ctagactt |
37881296 |
T |
|
| Q |
213 |
gatttgttatgtgattggtgttggttgtgtttttctttcaatgatgca |
260 |
Q |
| |
|
|||| || |||||||||||||| ||||||| | |||||||||||| |
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|
| T |
37881295 |
gattagtcgtgtgattggtgttgaatgtgtttcttattcaatgatgca |
37881248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 122 - 246
Target Start/End: Complemental strand, 37854926 - 37854808
Alignment:
| Q |
122 |
aaacaagatcacgtggaactgtaaattatgatacaacttttgcataaggtacattttatatatgtggcccgattgtttctttgcttgacttgatttgtta |
221 |
Q |
| |
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|||||||||||| |||||| || ||||||||| |||||||| | ||||||||||| ||||||||||||| ||||| ||||||||||||| | || | |
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| T |
37854926 |
aaacaagatcacatggaacagtgaattatgattcaacttttagaaaaggtacattt----tatgtggcccgatggtttc-ttgcttgacttga-tagtca |
37854833 |
T |
|
| Q |
222 |
tgtgattggtgttggttgtgttttt |
246 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
37854832 |
tgtgattggtgttggttgtgttttt |
37854808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 37867461 - 37867379
Alignment:
| Q |
10 |
ggggtctcaatttatatagtactaattattactaactaaaca-ccctttttgttaaactaagacaaaaggaatctgattcaaacca |
94 |
Q |
| |
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|||||||||||||||||||||| ||||| |||||| |||||| || |||||||||| |||||||||| ||||||||||||||||| |
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| T |
37867461 |
ggggtctcaatttatatagtacaaattactactaa-taaacagccttttttgttaagctaagacaaa--gaatctgattcaaacca |
37867379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 9239942 - 9240025
Alignment:
| Q |
9 |
gggggtctcaatttatatagtactaattattactaactaaac-accctttttgttaaactaagacaaaaggaatctgattcaaacca |
94 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||| ||||| ||| ||||| |||| |||||||||| ||||||||||||||||| |
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| T |
9239942 |
gggggtctcaatttatatagtacaaattactactaa-taaacaaccttttttattaagctaagacaaa--gaatctgattcaaacca |
9240025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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