View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4429-Insertion-17 (Length: 165)
Name: NF4429-Insertion-17
Description: NF4429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4429-Insertion-17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 82; Significance: 5e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 47523997 - 47524142
Alignment:
| Q |
7 |
accgatcctacatagg-tctccatcctgaa-acattcttgaagatggt-atcccttctgac-ttggattcaacttcagtagtaagtgctattattgcctc |
102 |
Q |
| |
|
|||||||||||||||| |||| ||||||| |||||| |||||||||| || | ||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47523997 |
accgatcctacataggatctcgatcctgactacattcgtgaagatggttatacattctgacattggattcaacttcagtagtaagtgctattatttcctc |
47524096 |
T |
|
| Q |
103 |
tgtcttcatcttcaccagggccaggccaaggtttcatctgttctgc |
148 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
47524097 |
tgtcttcatcatcatcagggccaggccaaggtttcatctgttctgc |
47524142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University