View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4429-Insertion-19 (Length: 47)
Name: NF4429-Insertion-19
Description: NF4429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4429-Insertion-19 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 40; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 33577807 - 33577768
Alignment:
| Q |
8 |
tcggtatcggtctcttccgtctcgccagcggctccgatta |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33577807 |
tcggtatcggtctcttccgtctcgccagcggctccgatta |
33577768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 48529153 - 48529114
Alignment:
| Q |
8 |
tcggtatcggtctcttccgtctcgccagcggctccgatta |
47 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| ||||| |
|
|
| T |
48529153 |
tcggtatcggtctcttccgtctcgctaacggctctgatta |
48529114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 28; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 34849811 - 34849850
Alignment:
| Q |
8 |
tcggtatcggtctcttccgtctcgccagcggctccgatta |
47 |
Q |
| |
|
||||||||||||||||| ||||||| | |||||||||||| |
|
|
| T |
34849811 |
tcggtatcggtctcttctgtctcgctaacggctccgatta |
34849850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University