View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4429-Insertion-3 (Length: 1013)
Name: NF4429-Insertion-3
Description: NF4429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4429-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 930; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 930; E-Value: 0
Query Start/End: Original strand, 4 - 1002
Target Start/End: Original strand, 38358892 - 38359895
Alignment:
| Q |
4 |
aacaagaagaatgataattgttgtatcattgaaagcttcaagcacaaaatgtaaaagaccttttggtggtggctttttgtaagtatttgaaccgaacaac |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38358892 |
aacaagaagaatgataattgttgtatcattgaaagcttcaagcacaaaatgtaaaagaccttttggtggtggttttttgtaagtatttgaaccgaacaac |
38358991 |
T |
|
| Q |
104 |
tcgagccgtctcaaaatatcatcgtcacttccaataattccctttgttggaaatgttccaagaacatgtccaacaccttcaactcctccaaactcactta |
203 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38358992 |
tcgagccgtctcgaaatatcatcgtcacttccaataattccctttgttggaaatgttccaagaacatgtccaacaccttcaactccaccaaactcactta |
38359091 |
T |
|
| Q |
204 |
aggacttcaagtttttgtccttaaccatatcagcaagtttggtcttatcaac---aacatcagaaaccaaagagtaatgattggttccattatgttgtgt |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38359092 |
aggacttcaagtttttgtccttaaccatatcagcaagtttggtcttatcaacaacaacatcagaaaccaaagagtaatgattggttccattatgttgtgt |
38359191 |
T |
|
| Q |
301 |
aattagtggttcaattatatcaagagtagtggtggaacttgaagattctgtgtgaaagagttttgtgtaagggttagagttttttctagatataacctct |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38359192 |
aattagtggttcaattatatcaagagtagtggtggaacttgaagattctgtgtgaaagagttttgtgtaagggttagagttttttctagatataacctct |
38359291 |
T |
|
| Q |
401 |
tttgcaagggaaagcataacccttctagaataaatagctgtgtatgcaaaacgccaccttctttttgcattggtgtatttggaagtgactttggtgaggg |
500 |
Q |
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| T |
38359292 |
tttgcaagggaaagcataacccttctagaataaatagctgtgtatgcaaaacgccaccttctttttgcattggtgtatttggaagtgactttggcgaggg |
38359391 |
T |
|
| Q |
501 |
tattggtgatgtcaatgataaatgaggtaccatcatattgtagattatgattattagacatggtggaattttactaaaggtttagagtatgagaagaaat |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38359392 |
tattggtgatgtcaatgataaatgaggtaccatcatattgtagattatgattattagacatggtggaattttactaaaggtttagagtatgagaagaaat |
38359491 |
T |
|
| Q |
601 |
atctagtttgaggaaaggactaggaaagaacttcattctgtagttacaaggatggttgcataaatatatatagacatttttatatttgtcgtgttaaagt |
700 |
Q |
| |
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| T |
38359492 |
atctagtttgaggaaagaactaggaaagaacttcattctgtagttacaaggatggttgcataaatatatatagacatttttatatttgtcgtgttaaagt |
38359591 |
T |
|
| Q |
701 |
gtacatcaaatagtttccatgtaacttcctagaaaaactatgaaatctacactgtatttctttatgtttttgttgttatttaatttggtcaaaggtggga |
800 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
38359592 |
gtacatgaaatagtttccatgtaacttcctagaaaaactatgaaatctacactgtatttctttatgtttttgttgttatctaatttggtcaaaggtatga |
38359691 |
T |
|
| Q |
801 |
aaaggacttttttaacatataaacattcttgcggtgcaatttaaatggtttttgctaagaagaaagtaacaagtttgatactaatacacattaaatggaa |
900 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38359692 |
aaaggacttttttaacatataaacattcttgcggtgcaatttaaatggtttttgctaagaagaaagtaacaagtttgatactaatacacattaaatggaa |
38359791 |
T |
|
| Q |
901 |
gtaatgtatagttgaaatttcagaataaaaactgatgcacgatctgtgtaatg-aaaatatac-tagtgggatgcattttcatgaagtcgacataaaact |
998 |
Q |
| |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38359792 |
gtaatgtatagtggaaatttcaaaataaaaactgatgcacgatctgtgtaatgaaaaatatacttagtgggatgcattttcatgaagtcgacataaaact |
38359891 |
T |
|
| Q |
999 |
gagt |
1002 |
Q |
| |
|
|||| |
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|
| T |
38359892 |
gagt |
38359895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 388 - 637
Target Start/End: Original strand, 7554152 - 7554401
Alignment:
| Q |
388 |
agatataacctcttttgcaagggaaagcataacccttctagaataaatagctgtgtatgcaaaacgccaccttctttttgcattggtgtatttggaagtg |
487 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7554152 |
agatatgacctcttttgcaagggaaagcataacccttctagaataaatagttgtgtatgcaaaacgccaccttctttttgtattggtgtatttggaagtg |
7554251 |
T |
|
| Q |
488 |
actttggtgagggtattggtgatgtcaatgataaatgaggtaccatcatattgtagattatgattattagacatggtggaattttactaaaggtttagag |
587 |
Q |
| |
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|||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| ||||||| |
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| T |
7554252 |
actttggtgaaggtattggtgatgtcaatgatcaacgaggtaccatcatattgtagattatgattaatagagatggtggtattttactaaagctttagag |
7554351 |
T |
|
| Q |
588 |
tatgagaagaaatatctagtttgaggaaaggactaggaaagaacttcatt |
637 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7554352 |
aatgagaagaaatatctagtttgaggaaaggactaggaaagaacttcatt |
7554401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 757 - 794
Target Start/End: Original strand, 7555271 - 7555308
Alignment:
| Q |
757 |
tttctttatgtttttgttgttatttaatttggtcaaag |
794 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| |
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| T |
7555271 |
tttctttatgtttttgttgttacctaatttggtcaaag |
7555308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 5e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 702 - 793
Target Start/End: Original strand, 25515444 - 25515535
Alignment:
| Q |
702 |
tacatcaaatagtttccatgtaacttcctagaaaaactatgaaatctacactgtatttctttatgtttttgttgttatttaatttggtcaaa |
793 |
Q |
| |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25515444 |
tacatgaaatagtttccatgtaacttcctagcaaaactatgaaatctacactgtatttctttatgtttttgttgttatctaatttggtcaaa |
25515535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 702 - 792
Target Start/End: Complemental strand, 25519930 - 25519840
Alignment:
| Q |
702 |
tacatcaaatagtttccatgtaacttcctagaaaaactatgaaatctacactgtatttctttatgtttttgttgttatttaatttggtcaa |
792 |
Q |
| |
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||||| ||||||||| ||||||||||||||| |||||||||||||||| | |||||||||||||||| |||||||||| |||||||||||| |
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| T |
25519930 |
tacatgaaatagttttcatgtaacttcctagcaaaactatgaaatctatagtgtatttctttatgttcttgttgttatctaatttggtcaa |
25519840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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