View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4429-Insertion-6 (Length: 859)
Name: NF4429-Insertion-6
Description: NF4429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4429-Insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 30 - 484
Target Start/End: Complemental strand, 19894894 - 19894439
Alignment:
| Q |
30 |
aatttaaaagtttgtagattttgttgtgaccaatttgagcgtgaataccataaacttatctttattttttactcccttttgcatctttgttgacgacaaa |
129 |
Q |
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| T |
19894894 |
aatttaaaagtttgtagattttgttgtgaccaatttgaacgtgaataccataaacttatctttattttttactcccttttgcatctttgttgacgacaaa |
19894795 |
T |
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| Q |
130 |
taggagaaagttccatcctagagcacgatagtacatttatttgggccacaaagatggattagaagctacaaataattattcttgacattttcaaaatagt |
229 |
Q |
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| T |
19894794 |
taggagaaagttccatcctagagcacgatagtacatttatttgggccacaaagatggattagaagctacaaataattattcttgacattttccaaatagt |
19894695 |
T |
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| Q |
230 |
actattcttttttgacctttcgagaaaatcaccatgttaccatttcttgcccagcaga--tcacaatacatcttccctnnnnnnnnnnnnnnnnngatca |
327 |
Q |
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| T |
19894694 |
actattcttttttgacctttcgagaaaatcaccatgttaccatttcttgcccaccagatctcacaatacatcttccct-caaaaaaaagaaaaaagatca |
19894596 |
T |
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| Q |
328 |
caatacatatgtctcctctcaaactagaatatctacaagaaccaaacatcttcccagttacattagggtctatatgattataacattctacaatgtatac |
427 |
Q |
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| T |
19894595 |
caatacatatgtctcctctcaaactagaatatctacaagaaccaaacatcttcccagttgcattagggtctatatgattataacattctacaatgtatac |
19894496 |
T |
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| Q |
428 |
agaaggccaagcattcctcaaatacttctcatgacttcaactaattcctaagaacaa |
484 |
Q |
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| T |
19894495 |
tgaaggccaagcattcctcaaatacttctcatgacttcaattaattcctaagaacaa |
19894439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 484 - 859
Target Start/End: Complemental strand, 19894391 - 19894010
Alignment:
| Q |
484 |
agacttttggcttggggagatatctcggcctaccatctatagta-----ggacgaagaaagaaggtgttatttggctacttgaaagatgtatttggagaa |
578 |
Q |
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| T |
19894391 |
agacttttggcttggggagatatcttggcctaccatctatagtatagtaggacgaagaaagaaggtgttatttggctacttgaaagatgtatttggagaa |
19894292 |
T |
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| Q |
579 |
taatacaacaatcgtctggaaaacatctttcaaagatgggtagagaagtcttaatcgagttagttgcacaatttgtt-cctgcttatcgcatgagcacgt |
677 |
Q |
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| T |
19894291 |
taatacaacaatcgtctggaaaacatctttcaaaggtgggtaaagaagtcttaatcgagttagttgcacaatttttttcctgcttaccgcatgagcacgt |
19894192 |
T |
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| Q |
678 |
ttttacttccttccactttgagggaggaaatccaaagaatggtcaattctttttagcagggatcaaatggaagacaaggaaagagaataaaatggttgag |
777 |
Q |
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| T |
19894191 |
ttttacttccttccactttgagggaggaaatccaaagaatggtcaattctttttggcggggatcaaatggaagacaaggaaagagaataaaatggttgag |
19894092 |
T |
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| Q |
778 |
ttggggacaaattaacaatgcggaaggaatatggaagtatgggttttcgtcatgtttatggttttaatttgtctatgctagg |
859 |
Q |
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| T |
19894091 |
taggggacaaattaacaatgcggaaggaatatggaagtatgggttttcgtcatgtttatggttttaatttgtctatgctagg |
19894010 |
T |
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