View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4429-Insertion-9 (Length: 651)
Name: NF4429-Insertion-9
Description: NF4429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4429-Insertion-9 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 217 - 651
Target Start/End: Original strand, 36083898 - 36084332
Alignment:
| Q |
217 |
aaagctaatccttaaatcttggtcaaggttttaaaaaacggtctgcaacggaaaatatagcagcgttttcaacgttatattgtcacggacatcaaattgt |
316 |
Q |
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| T |
36083898 |
aaagctagtccttaaatcttggtcaaggttttaaaaaatggtctgcaacggcaaatatagccgtgatttcaacgttatattgtcaccaacatcaaattgt |
36083997 |
T |
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| Q |
317 |
gatcgctattgcggaaacacaagttgtatttatccgtgattttctacaatatcaaagattactgcgtggtcgcgaccatgattttgaaactttgcacaaa |
416 |
Q |
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| T |
36083998 |
gatcgctatcgcggaaacacaagttgtatttatccgcaattttctacaatatcaaatattaatgcgtggccgcgaccatgattttgaaactttgcacaaa |
36084097 |
T |
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| Q |
417 |
gatttataaatgcataaaaaccaaacaaacaatggaacattataaacaatctagctcaaattcagtgtttgtttattggacttacttctcttatctcagc |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36084098 |
gatttataaatgcataaaaaccaaacaaacaatggaacattataaacaatctagctcaaattcagtgtttgtttattggacttacttctcttatctcagc |
36084197 |
T |
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| Q |
517 |
caatcgctttgtttccttttcgactcgaccgagatgagcatgaaccttatctctaacctccaactttcttctctcaatttcttcttccttttctctaaac |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36084198 |
caatcgctttgtttccttttcgactcgaccgagatgagcatgaaccttatctctaacctccaactttcttctctcaatttcttcttccttttctctaaac |
36084297 |
T |
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| Q |
617 |
attgctagaactgatcttgacatttcctcttcctt |
651 |
Q |
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| T |
36084298 |
attgctagaactgatcttgacatttcctcttcctt |
36084332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 36083695 - 36083809
Alignment:
| Q |
8 |
gcaacatccttcctctttggatctgtgaaaccctcaatctcctatgcaatttctcaaacaaacattatttataatggatgaaaaaatcttgaatataata |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
36083695 |
gcaacatccttcctctttggatctgtgaaaccctcaatctcctatgcaatttctcaaacaaagattatttataatggatgaaaaaatcttgaatataaca |
36083794 |
T |
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| Q |
108 |
aatgtgaataatttt |
122 |
Q |
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| T |
36083795 |
aatgtgaataatttt |
36083809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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