View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4429_low_1 (Length: 683)
Name: NF4429_low_1
Description: NF4429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4429_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 75 - 671
Target Start/End: Original strand, 12506911 - 12507491
Alignment:
| Q |
75 |
tcaaagttatttgggtgatgatgagtgacatgaggaaatgcaatgtctgtaattctgtgtaaactgtaaagatatgactttataggacaatgagagtcag |
174 |
Q |
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| T |
12506911 |
tcaaagttatttgggtgatgatgagtgacatgaggaaatgcaatgtctgtaattctgtgtaaactgtaaagatatgactttataggacaatgagagtcag |
12507010 |
T |
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| Q |
175 |
aaggaatagagtaatgttgtgctcgtatatatgttaaggaaacacaacataaagtgagacattaaatctgatattgataggatcgtaagaannnnnnnna |
274 |
Q |
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| T |
12507011 |
aaggaatagagtaatgttgtgctcgtata-----------aacacaacataaagtgagacattaaatctgatatcgataggatcgtaagaatttttttta |
12507099 |
T |
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| Q |
275 |
accatcacattaaagattgtgaggaaaaatcttgtaagttgcctattgattaaggcatatgggtattt-atatagtataggtcgattatttttgaaagag |
373 |
Q |
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| T |
12507100 |
accatcacattaaagattgtgaggaaaaatcttgtaagttgcctattgattaaggcatatgtgtattttatatagtataggtcgattatttttgaaagag |
12507199 |
T |
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| Q |
374 |
cagaaaatcgtccctatcaagagtccacaactgcattaattagcatcaatttattggttacctttcaactattaattaaagcatgccaactactaatgct |
473 |
Q |
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| T |
12507200 |
cacaaaatcgtccctatcaagagtccacaactgcattaattagcatcaatttattggttacctttcaactattaattaaagcatgccaactactaatgct |
12507299 |
T |
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| Q |
474 |
gctagcccatattttcttctctcaaccattttgcattactgctatgttatcatcacctaatctccattatgatggtattttatcctttgtttctagtctt |
573 |
Q |
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| T |
12507300 |
gctagcccatattttcttctctcaaccattttgcattactgcgatattatcatcacctaatttccattatgatggta-tttatcctttgtttctagtctt |
12507398 |
T |
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| Q |
574 |
ctatctaagtttcctagttcttataagttataacgtgtcatgtcaaaatttgagataaggtgtactttaatttattttcgttttgatgatctgtgctc |
671 |
Q |
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| T |
12507399 |
ctatctaagtttcctagttcttataagttataacgtgtcatgtcaaaatttgagataaggtgtac-----tttattttcgttttgatgatttgtgctc |
12507491 |
T |
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