View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4429_low_2 (Length: 413)
Name: NF4429_low_2
Description: NF4429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4429_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 3 - 398
Target Start/End: Original strand, 47191938 - 47192333
Alignment:
| Q |
3 |
cagagaccaacctgttaacggcaaacactcaaaactctcacttttcaaaaacggtaatctcattttaaccgatgcagacagaaaaagaacaccaatttgg |
102 |
Q |
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| T |
47191938 |
cagagaccaacctgttaacggcaaacactcaaaactctcacttttcaaaaacggtaatctcattttaaccgatgcagacagaaaaagaacaccaatttgg |
47192037 |
T |
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| Q |
103 |
tccacttcatccttttctccttttccattacagctcaagcttcaaaacaatggcaacctcgttctcgccacgaccaacggtaacattagtatcctttggc |
202 |
Q |
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| T |
47192038 |
tccacttcatccttttctccttttccattacagctcaagcttcaaaacaatggcaacctcgttctctccacgaccaacggtaacattagtatcctttggc |
47192137 |
T |
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| Q |
203 |
aaagctttgattttccaacagatactcttcttcctggccaagaaattaatgagcgagcaaccttagtttcatccaaaagtgaaacaaactattcctcagg |
302 |
Q |
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| T |
47192138 |
aaagctttgattttccaacagatactcttcttcctggccaagaaattaatgagcgagcaaccttagtttcatccaaaagtgaaacaaactattcctcagg |
47192237 |
T |
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| Q |
303 |
tttctataagttttatttcgacaacgacaatgctcttcgtcttctattcaaaagtcctttgttatctagtgtctattggccatcaccttgggtatt |
398 |
Q |
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| T |
47192238 |
tttctataagttttatttcgacaacgacaatgctcttcgtcttctattcaaaagtcctttgttatctagtgtctattggccatcaccttgggtatt |
47192333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 26693264 - 26693303
Alignment:
| Q |
199 |
tggcaaagctttgattttccaacagatactcttcttcctg |
238 |
Q |
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| T |
26693264 |
tggcaaagctttgattttccaacagataccctccttcctg |
26693303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 26745784 - 26745712
Alignment:
| Q |
7 |
gaccaacctgttaacggcaaacactcaaaactctcacttttcaaaaacggtaatctcattttaaccgatgcag |
79 |
Q |
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||||||||||||||||| |||| ||||| ||| || ||| |||||| || || |||||||||||||| |||| |
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| T |
26745784 |
gaccaacctgttaacggaaaacgctcaacactttcccttctcaaaactggcaacctcattttaaccgacgcag |
26745712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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