View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4430-Insertion-1 (Length: 884)
Name: NF4430-Insertion-1
Description: NF4430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4430-Insertion-1 |
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| [»] scaffold1248 (1 HSPs) |
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| [»] scaffold0952 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 130 - 779
Target Start/End: Original strand, 20568235 - 20568884
Alignment:
| Q |
130 |
caatccatctaagagattttgatatcttactgttacgagaaaactataacaagccaggatgatctgatatcaactatatggctgagatcgtttacaacaa |
229 |
Q |
| |
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||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| || |
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| T |
20568235 |
caatccatctaagagatttggatttcttactgttacaagaaaactataacaagccaggattatctgatatcaaatatatggctgagatcgtttacaataa |
20568334 |
T |
|
| Q |
230 |
tttgaaaccacgttaatctaaattttatatagtggtatttctaccgcagcaaaaccgaatctatctaagagatttgaatttcttactgttgtatcagaaa |
329 |
Q |
| |
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||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
20568335 |
tttaaaaccacgttaatctaaattttatacagtagtatttctaccgcagcaaaaccggatctatctaagagatttgaatttcttactgctgtatcagaaa |
20568434 |
T |
|
| Q |
330 |
actataacatattactgttatatcagaaaactcatatggttgagatcgtttataataattttggtcttcaaataaaaactatctctatttttatgttgaa |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
20568435 |
actataacatattactgttatatcagaaaactcatatggttgagatcgtttataataattttgttcttcaaataaaaactatctctatttttatgttgaa |
20568534 |
T |
|
| Q |
430 |
acaaaaagtgagtgatgtgcaaattttaaaaccgtaaaacatttgtgtccatccaattgattcggattgtttctcggatttcgacggtaatgggttagtt |
529 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20568535 |
acaaaaagtgagtggtgtgcaaattttaaaaccgtaaaacatttgtgtccatccaattgattcggattgtttctcggatttcgacggtaatgggttagtt |
20568634 |
T |
|
| Q |
530 |
agggtttcaaatcaaattagggatttagtttttaaacatgaaatgattaaacgaagaagaatccttacccttggagatgaatgtgaccaattggatagag |
629 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20568635 |
agggtttcaaatcaaattagggatttagtttttaaacatgaaatgattaaacgaagaagaatccttacccttggagatgaatgtgaccaattggatagag |
20568734 |
T |
|
| Q |
630 |
tagttgaagaaggatttttaggggtagagagttcttctctaattannnnnnnnnnnnnnnnnaaagaaagttcttctctaattcttgatgtgtttgtttg |
729 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
20568735 |
tagttgaagaaggatttttaggggtagagagttcttctctaattattattatttttttttttaaagaaagttcttttctaattcttgatgtgtttgtttg |
20568834 |
T |
|
| Q |
730 |
agtggccgcactatgcatatatataggctgaaaattgaaaggagaaagga |
779 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20568835 |
agtggccgcactatgcatatatataggctgaaaattgaaaggagaaagga |
20568884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 20568108 - 20568163
Alignment:
| Q |
199 |
tcaactatatggctgagatcgtttacaacaatt-tgaaaccacgttaatctaaatt |
253 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
20568108 |
tcaaatatatggttgagatcgtttacaacaattctgaaacaacgttaatctaaatt |
20568163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 268 - 319
Target Start/End: Original strand, 20568217 - 20568268
Alignment:
| Q |
268 |
ttctaccgcagcaaaaccgaatctatctaagagatttgaatttcttactgtt |
319 |
Q |
| |
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|||||| | ||||||||| |||| |||||||||||||| ||||||||||||| |
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| T |
20568217 |
ttctacagtagcaaaacccaatccatctaagagatttggatttcttactgtt |
20568268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 713 - 778
Target Start/End: Original strand, 20536135 - 20536200
Alignment:
| Q |
713 |
cttgatgtgtttgtttgagtggccgcactatgcatatatataggctgaaaattgaaaggagaaagg |
778 |
Q |
| |
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||||||||||||||| | | | | ||| |||||||||||||||||||||| |||||| ||||||| |
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| T |
20536135 |
cttgatgtgtttgttggtgcgtacacaccatgcatatatataggctgaaaaatgaaagaagaaagg |
20536200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 3e-63; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 363 - 554
Target Start/End: Original strand, 26064854 - 26065048
Alignment:
| Q |
363 |
atatggttgagatcgtttataataattttggtcttcaaataaaaac-tatctctatttttatgttgaaacaaa--aagtgagtgatgtgcaaattttaaa |
459 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||| | || ||||| ||||||||||||||| |
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| T |
26064854 |
atatggttgagttcgtttataataattttggttttcaaataaaaaaatatctctttttttatgttgaaacatataaaccgagtgctgtgcaaattttaaa |
26064953 |
T |
|
| Q |
460 |
accgtaaaacatttgtgtccatccaattgattcggattgtttctcggatttcgacggtaatgggttagttagggtttcaaatcaaattagggatt |
554 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||| |
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| T |
26064954 |
accgtaaaacatttgtttccatccaaatgattcggattgtttctcggatttcaacggtaatgggttagttagggtttcaaataaatttagggatt |
26065048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 698 - 779
Target Start/End: Original strand, 26065220 - 26065303
Alignment:
| Q |
698 |
agttcttctctaattcttgatgtgtttgtttgagtggccgcactatgc--atatatataggctgaaaattgaaaggagaaagga |
779 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| || || |||||||||||||||||||||||||||||||||| |
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| T |
26065220 |
agttcttctctaattcttgatgtgtttgttggagtggccgcagtaggcatatatatataggctgaaaattgaaaggagaaagga |
26065303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 640 - 673
Target Start/End: Original strand, 26065201 - 26065234
Alignment:
| Q |
640 |
aggatttttaggggtagagagttcttctctaatt |
673 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
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| T |
26065201 |
aggaattttaggggtagagagttcttctctaatt |
26065234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 2e-36; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 363 - 610
Target Start/End: Complemental strand, 17797389 - 17797151
Alignment:
| Q |
363 |
atatggttgagatcgtttataataattttggtcttcaaataaaaactatctctatttttatgttgaaacaaaaagtgagtgatgtgcaaattttaaaacc |
462 |
Q |
| |
|
||||||||||||||||||| ||||||||| || |||| ||||||| ||||| | | ||||||||||||| ||| || || |||||||||||||||||| |
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|
| T |
17797389 |
atatggttgagatcgtttacaataattttagtattcagataaaaattatcttt--tcttatgttgaaacataaaccgattggtgtgcaaattttaaaacc |
17797292 |
T |
|
| Q |
463 |
gtaaaacatttgtgtccatccaattgattcggattgtttctcggatttcgacggtaatgggttagttagggtttcaaatcaaattagggattta--gttt |
560 |
Q |
| |
|
|| || ||||| ||||||||||||||| | |||||| |||||||||||||||||| |||||||||| |||||||||||||| | || |
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|
| T |
17797291 |
gtcaa-------------tccaaatgattcggattgtttgttggattttaacggtaatgggttagttatggtttcaaataaaattagggatttaatggtt |
17797205 |
T |
|
| Q |
561 |
ttaaacatgaaatga----ttaaacgaagaagaatccttacccttggagatgaa |
610 |
Q |
| |
|
||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17797204 |
ttacacatgaaatgatggtttaaaagaagaagaatccttacccttggagatgaa |
17797151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 726 - 775
Target Start/End: Original strand, 5330892 - 5330941
Alignment:
| Q |
726 |
tttgagtggccgcactatgcatatatataggctgaaaattgaaaggagaa |
775 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5330892 |
tttgagtggccgcactatgcatatatataggctgaaaattgaaaggagaa |
5330941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 698 - 767
Target Start/End: Complemental strand, 17797103 - 17797034
Alignment:
| Q |
698 |
agttcttctctaattcttgatgtgtttgtttgagtggccgcactatgcatatatataggctgaaaattga |
767 |
Q |
| |
|
|||||||||||||||||||||||||||||| || | ||| || || ||||||||||||||||||||||| |
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|
| T |
17797103 |
agttcttctctaattcttgatgtgtttgttggaatagccacaatagacatatatataggctgaaaattga |
17797034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1248 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1248
Description:
Target: scaffold1248; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 702 - 778
Target Start/End: Original strand, 756 - 832
Alignment:
| Q |
702 |
cttctctaattcttgatgtgtttgtttgagtggccgcactatgcatatatataggctgaaaattgaaaggagaaagg |
778 |
Q |
| |
|
|||||||||||||||||||||||||| | | | | ||| || ||||||||||||||||||| |||||| ||||||| |
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|
| T |
756 |
cttctctaattcttgatgtgtttgttggtgcgtacacaccattcatatatataggctgaaaaatgaaagaagaaagg |
832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0952 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0952
Description:
Target: scaffold0952; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 702 - 778
Target Start/End: Complemental strand, 1557 - 1481
Alignment:
| Q |
702 |
cttctctaattcttgatgtgtttgtttgagtggccgcactatgcatatatataggctgaaaattgaaaggagaaagg |
778 |
Q |
| |
|
|||||||||||||||||||||||||| | | | | ||| || ||||||||||||||||||| |||||| ||||||| |
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| T |
1557 |
cttctctaattcttgatgtgtttgttggtgcgtacacaccattcatatatataggctgaaaaatgaaagaagaaagg |
1481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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