View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4430-Insertion-11 (Length: 115)
Name: NF4430-Insertion-11
Description: NF4430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4430-Insertion-11 |
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| [»] scaffold0176 (1 HSPs) |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: scaffold0176 (Bit Score: 108; Significance: 1e-54; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 31676 - 31569
Alignment:
| Q |
8 |
atataactatagttatatataatcaaacctattcttttcaagcccaatgagaaatgcagcttcagcaacagctgcataaaggcttccagcaccagcatct |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31676 |
atataactatagttatatataatcaaacctattcttttcaagcccaatgagaaatgcagcttcagcaacagctgcataaaggcttccagcaccagcatct |
31577 |
T |
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| Q |
108 |
tccttcca |
115 |
Q |
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|||||||| |
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| T |
31576 |
tccttcca |
31569 |
T |
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Target: chr7 (Bit Score: 108; Significance: 1e-54; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 34164855 - 34164748
Alignment:
| Q |
8 |
atataactatagttatatataatcaaacctattcttttcaagcccaatgagaaatgcagcttcagcaacagctgcataaaggcttccagcaccagcatct |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34164855 |
atataactatagttatatataatcaaacctattcttttcaagcccaatgagaaatgcagcttcagcaacagctgcataaaggcttccagcaccagcatct |
34164756 |
T |
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| Q |
108 |
tccttcca |
115 |
Q |
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|||||||| |
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| T |
34164755 |
tccttcca |
34164748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 34171352 - 34171245
Alignment:
| Q |
8 |
atataactatagttatatataatcaaacctattcttttcaagcccaatgagaaatgcagcttcagcaacagctgcataaaggcttccagcaccagcatct |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34171352 |
atataactatagttatatataatcaaacctattcttttcaagcccaatgagaaatgcagcttcagcaacagctgcataaaggcttccagcaccagcatct |
34171253 |
T |
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| Q |
108 |
tccttcca |
115 |
Q |
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|||||||| |
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| T |
34171252 |
tccttcca |
34171245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 34214950 - 34214843
Alignment:
| Q |
8 |
atataactatagttatatataatcaaacctattcttttcaagcccaatgagaaatgcagcttcagcaacagctgcataaaggcttccagcaccagcatct |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34214950 |
atataactatagttatatataatcaaacctattcttttcaagcccaatgagaaatgcagcttcagcaacagctgcataaaggcttccagcaccagcatct |
34214851 |
T |
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| Q |
108 |
tccttcca |
115 |
Q |
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|||||||| |
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| T |
34214850 |
tccttcca |
34214843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 38725417 - 38725472
Alignment:
| Q |
51 |
ccaatgagaaatgcagcttcagcaacagctgcataaaggcttccagcaccagcatc |
106 |
Q |
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||||| || |||||||||||||| |||||||||||||| |||||| ||||||||| |
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| T |
38725417 |
ccaataaggaatgcagcttcagccacagctgcataaagacttccatgaccagcatc |
38725472 |
T |
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