View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4430-Insertion-2 (Length: 560)
Name: NF4430-Insertion-2
Description: NF4430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4430-Insertion-2 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 8 - 560
Target Start/End: Complemental strand, 39178853 - 39178304
Alignment:
| Q |
8 |
cactcattcactcacatttggatttctaaaacttccttcctcgagtaaggcaatagttcatggtaatgaaattgacggggtgtatcacttgacttgtatt |
107 |
Q |
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| T |
39178853 |
cactcattcactcacatttggatttctaaaatttccttcctcgagtaaggcaatagttcatggtaatgaaattgacggggtgtatcacttgacttgtatt |
39178754 |
T |
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| Q |
108 |
aagaatttttgaacagcctaattctatatgctgaataagctagacccatggtttcaaatagaagttgcaatcacagatgtgattgtggctgcacgcagca |
207 |
Q |
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| T |
39178753 |
aagaatttttaaacagcctaattctatatgctgaataagctagacccatagtttcaaatagaagttgcaatcacagatgtgattgtggctgcacgtagct |
39178654 |
T |
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| Q |
208 |
actgaaaatgcaacattgtaagttgtaattgtagttatctaggagttgccgcatatacctttttaccataaatataattcacaaagactcaccttcaaac |
307 |
Q |
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| T |
39178653 |
actgaaaatgcaacattgtaagttgtaattgtagttatctaggagttgtcgcatatacctttttaccataaatataattcacaaagactcaccttcaaac |
39178554 |
T |
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| Q |
308 |
tctccctaacccttaaaaatgtttatatcagacaaccctttaacttgggatataaatcagtttggttatagttttcttaacaacatgaattatgatccac |
407 |
Q |
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| T |
39178553 |
tctccctaacccttaaaaatgtttatatcagacaaccctttaacttgggatataaatcagtttggttatagttttcttaacaacatgaattatgatccac |
39178454 |
T |
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| Q |
408 |
gctaacaacttatgggatgataagccacaacaagtcaacaacagacttaataatacatcttgacccagaaattcaagtatctgatgcatgtttacattct |
507 |
Q |
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| T |
39178453 |
gctaacaacttatgggatgataaaccacaacaagtcaacaacagacttaataatacatcttgacccagaaattcaagtatctgatgcatgtttacattct |
39178354 |
T |
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| Q |
508 |
cctatggctggtattgaatttactcattctgatcattgtcgggatattatctt |
560 |
Q |
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| T |
39178353 |
cctatg--ttgtattgaatttactcattctgatcattgtc-ggatattatctt |
39178304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 130 - 560
Target Start/End: Complemental strand, 39181909 - 39181493
Alignment:
| Q |
130 |
tctatatgctgaataagctagacccatggtttcaaatagaagttgcaatcacagatgtgattgtggctgcacgcagcaactgaaaatgcaac-attgtaa |
228 |
Q |
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||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| | ||||||| ||||||||| ||||||| |
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| T |
39181909 |
tctatatgctgaataagctagacgcatagtttcaaataggagttgcaatcacagatgtgattgtggctgaa----gcaactgcaaatgcaaccattgtaa |
39181814 |
T |
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| Q |
229 |
gttgt---aattgtagttatctaggagttgccgcatatacctttttaccataaatataattcacaaagactcaccttcaa-actctccctaacccttaaa |
324 |
Q |
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| T |
39181813 |
gttgttgtaactgtagttatctag-agttgtcgcatac-cttttttaccataaatataattcacaaa--------ttaaatactcaccttaacctttaaa |
39181724 |
T |
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| Q |
325 |
aatgtttatatcagacaaccctttaacttgggatataaatcagtttggttatagttttcttaacaacatgaattatgatccacgctaacaacttatggga |
424 |
Q |
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| T |
39181723 |
aatgtttatatcagacaaccctttagcttgggatataaatcagtttggtta--gtttgcttaacaacatgaattatgatccacgctaacaacttatgggg |
39181626 |
T |
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| Q |
425 |
tgataagccacaacaagtcaacaacagacttaataatacatcttgacccagaaattcaagtatctgatgcatgtttacattctcctatggctggtattga |
524 |
Q |
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|| ||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || | |||||| |
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| T |
39181625 |
tgctaaaccacaacaactcaacaacaaacttaataatacatcttgacccagaaattcaagtatctgatgcatgtttaccttctcttgtgctt--tattga |
39181528 |
T |
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| Q |
525 |
atttactcattctgatcattgtcgggatattatctt |
560 |
Q |
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| T |
39181527 |
atttactcattctgatcattgtc-agatattatctt |
39181493 |
T |
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