View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4430-Insertion-4 (Length: 447)
Name: NF4430-Insertion-4
Description: NF4430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4430-Insertion-4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 6 - 447
Target Start/End: Complemental strand, 44865079 - 44864638
Alignment:
| Q |
6 |
catcactaattctccgcaacatgcttattatgtaatgatttatagcaagggaattgcttttataaaacttgagcaaccaacacaatttctgaatgatact |
105 |
Q |
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| T |
44865079 |
catcactaattctccgcaacatgcttattatgtaatgatttatagcaagggaattgcttttataaaacttgagcaaccaacacaatttctgaatgatact |
44864980 |
T |
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| Q |
106 |
gtgattcgcaaaggcagagacaagcgtcgaaacattgaagtcaacttcactaactgcatttatttgctcaccttcagaaaaatcaccagtgtcatccaac |
205 |
Q |
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| T |
44864979 |
gtgattcgcaaaggcagagacaagcgtcgaaacattgaaatcaacttcactaactgcatttatttgctcatcttcagaaaaatcaccagtgtcatccaac |
44864880 |
T |
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| Q |
206 |
atatcctcattaggatgttcaggatttgtgttttccattggtttcataccaacttgggagttcacatcttcctcgacatcttcatttttattatcatcaa |
305 |
Q |
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| T |
44864879 |
atatcctcattaggatgttcaggatttgtgttttccattggtttcataccaacttgggagttcacatcttcctcgacatcttcatttttattatcatcaa |
44864780 |
T |
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| Q |
306 |
gatttgtatttctcactgattccacaccaatttcagagttcacatctctcttgacattatcatctccattatcatcaagatttctgttttccgttggttc |
405 |
Q |
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| T |
44864779 |
gatttgtgtttctcactgattccacaccaatttcaaagttcacatctctcttgacattattatctccattatcatcaagatttctgttttccattggttt |
44864680 |
T |
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| Q |
406 |
caaacgaacttgggagttcacatctttctcgagattttgatg |
447 |
Q |
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| T |
44864679 |
caaacgaacttgggagttcacatctttctcgagattttgatg |
44864638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 228 - 302
Target Start/End: Complemental strand, 44864701 - 44864627
Alignment:
| Q |
228 |
gatttgtgttttccattggtttcataccaacttgggagttcacatcttcctcgacatcttcatttttattatcat |
302 |
Q |
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| T |
44864701 |
gatttctgttttccattggtttcaaacgaacttgggagttcacatctttctcgagattttgatgttcattatcat |
44864627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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