View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4430-Insertion-7 (Length: 284)
Name: NF4430-Insertion-7
Description: NF4430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4430-Insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 8 - 267
Target Start/End: Original strand, 44834349 - 44834608
Alignment:
| Q |
8 |
acaaacaactaccaatttgtaaacatagcttttctatccacttttggcaatggccaaactccaactctaaaccttgctggccattgtgatccagcctcaa |
107 |
Q |
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| T |
44834349 |
acaaacaactaccaatttgtaaacatagcttttctatccacttttggcaatggccaaactccaactctaaaccttgctggccattgtgatccagcctcaa |
44834448 |
T |
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| Q |
108 |
acggttgcacaaagtttagtagtgaaattcaaacttgtcaaagcaaaggcatcaaagtgttgctatctctaggaggtggtgccggaagctactctctttc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44834449 |
acggttgcacaaagtttagtagtgaaattcaaacttgtcaaagcaaaggcatcaaagtgttgctatctctcggaggtggtgccggaagctactctctttc |
44834548 |
T |
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| Q |
208 |
ctcagctgatggtgccacgcaggttgcaaattacctatggaacaatttcttgggtagcac |
267 |
Q |
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| T |
44834549 |
ctcagctgatgatgccacgcaggttgcaaattacctatggaacaatttcttgggtggcac |
44834608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 8 - 267
Target Start/End: Original strand, 44816992 - 44817251
Alignment:
| Q |
8 |
acaaacaactaccaatttgtaaacatagcttttctatccacttttggcaatggccaaactccaactctaaaccttgctggccattgtgatccagcctcaa |
107 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
44816992 |
acaaacaactacaaatttgtaaacatagcttttctatccacttttggcaatggccaaaatccaactctaaaccttgcaggccattgtgatccagcctcaa |
44817091 |
T |
|
| Q |
108 |
acggttgcacaaagtttagtagtgaaattcaaacttgtcaaagcaaaggcatcaaagtgttgctatctctaggaggtggtgccggaagctactctctttc |
207 |
Q |
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| T |
44817092 |
acggctgcacaaactttagtaaagatatccaaacttgtcaaagcaaaggcatcaaagtgttgctctctatcggaggtggcactggaagctactctctcta |
44817191 |
T |
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| Q |
208 |
ctcagctgatggtgccacgcaggttgcaaattacctatggaacaatttcttgggtagcac |
267 |
Q |
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||| || | | ||| | ||| ||||||| |||||||||||||||||||||||| |||| |
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| T |
44817192 |
ctcgtcttacgacgcctcacagcttgcaaactacctatggaacaatttcttgggtggcac |
44817251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 23396701 - 23396549
Alignment:
| Q |
8 |
acaaacaactaccaatttgtaaacatagcttttctatccacttttggcaatggccaaactc-caactctaaaccttgctggccattgtgatccagcctca |
106 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| || ||||| ||||||||| ||||||||||||||| || || |
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| T |
23396701 |
acaaacaactaccaatttataaacatagcttttctatccacttt-ggcaatggccaaaatcacaact--aaaccttgcaggccattgtgatccatccaca |
23396605 |
T |
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| Q |
107 |
aacggttgcacaaagtttagtagtgaaattcaaacttgtcaaagcaaaggcatcaa |
162 |
Q |
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|| || |||| ||| ||||||| || || |||||||||||||||||||||||||| |
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| T |
23396604 |
aatggctgcagaaactttagtaaagatatccaaacttgtcaaagcaaaggcatcaa |
23396549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 267
Target Start/End: Complemental strand, 17571175 - 17571053
Alignment:
| Q |
145 |
tcaaagcaaaggcatcaaagtgttgctatctctaggaggtggtgccggaagctactctctttcctcagctgatggtgccacgcaggttgcaaattaccta |
244 |
Q |
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||||||||||||||||||||||||||| | | | | ||| || | |||||||||||||| ||| || | | |||||||| ||||||| |||||| |
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| T |
17571175 |
tcaaagcaaaggcatcaaagtgttgctctttatcgaaggcggcgttggaagctactctctcaactcgtcttacgacaccacgcagcttgcaaactaccta |
17571076 |
T |
|
| Q |
245 |
tggaacaatttcttgggtagcac |
267 |
Q |
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|||||||||||||||||| |||| |
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| T |
17571075 |
tggaacaatttcttgggtggcac |
17571053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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