View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4430_high_1 (Length: 592)
Name: NF4430_high_1
Description: NF4430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4430_high_1 |
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| [»] scaffold0264 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 1 - 575
Target Start/End: Complemental strand, 6234269 - 6233695
Alignment:
| Q |
1 |
gaggggcgatgttattattgagggagaggggtgatgctgttattgaaggagaggggcgatgattgacaaatgttggcgactatgagaggagaagggagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| |
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| T |
6234269 |
gaggggcgatgttattattgagggagaggggtgatgctgttattgaaggagaggggcggtgattgacaaatgttggcgacgatgagaggaggagggagaa |
6234170 |
T |
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| Q |
101 |
aaagagtcttttgatgagggaaagacgtgtagggaaatagggaaacatactttctttattttaatcttttttattaaacaaataaatttcaacccttgta |
200 |
Q |
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| T |
6234169 |
aaggagtcttttgatgagggaaagacgtgaagggaaagagggaaacatactttgttttttttaatcttttttattaaacaaataaatctcaacccttgta |
6234070 |
T |
|
| Q |
201 |
taatgttttgtcacgtgtctttcatccataacctaaatgtattaaatggatcggagcttgagaaaaatggagcatacttgaattcacgttggagataacg |
300 |
Q |
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| T |
6234069 |
taatgttttgtcacgtgtctttcatccataacctaaatgtattaaatggatcggagcttgagaaaaatggagcatacttgaattaacgttggagataacg |
6233970 |
T |
|
| Q |
301 |
tagtagcgcgactatctcaaatgattttaatgtgtggcatgagttcgagtttggtgttgtgtgaccattgcaacgtatgtgaaattttacgaatgttgtc |
400 |
Q |
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| T |
6233969 |
tagtagctcgactatctcaaatgattttaatgtgtggcatgagttcgagtttggtgttgtgtgaccattgcaacgtatgtgaaattttacgaatgttgtc |
6233870 |
T |
|
| Q |
401 |
cttatataacagtttacatcaaccaatattgctaaaacaaaatatgaaatttatatgtttatgagtcaaaattttgtatattatcattgatcaatgcatt |
500 |
Q |
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| T |
6233869 |
cttatataacagtttacatcaaccaatattgctaaaacaaaatataaaatttatatgtttatgagtcaaaattttgtaaattatcattgatcaatgcatt |
6233770 |
T |
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| Q |
501 |
tgatgtgagtttgtaattcataacaagatttccaaagtatctcgtttgtaattcatgacaagatttccaaggtag |
575 |
Q |
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| T |
6233769 |
tgatgtgagtttgtaattcataacaagatttccaaagtatctcgtttgtaattcatgacaagatttctaaggtag |
6233695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 54448487 - 54448554
Alignment:
| Q |
183 |
taaatttcaacccttgtataatgttttgtcacgtgtctttcatccataacctaaatgtattaaatgga |
250 |
Q |
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| T |
54448487 |
taaatctcaacccttgaataatgttttgccaaatgtctttcatccatgacctaaatggactaaatgga |
54448554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 54448318 - 54448434
Alignment:
| Q |
33 |
gatgctgttattgaaggagaggggcgatgattgacaaatgttggcgactatgagaggagaagggagaaaaagagtcttttgatgagggaaagacgtgtag |
132 |
Q |
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|||| ||||||||| ||| || |||| |||| ||| || |||||| ||||||| ||| ||||||| |||||||| ||||||||||| ||||| || |
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| T |
54448318 |
gatgttgttattgagggatagcggcggtgatggacggattttggcggtgatgagagcagaggggagaagaagagtctaccgatgagggaaaaacgtgaag |
54448417 |
T |
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| Q |
133 |
ggaaatagggaaacata |
149 |
Q |
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| T |
54448418 |
ggaaagagggaaacata |
54448434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 23425 - 23490
Alignment:
| Q |
183 |
taaatttcaacccttgtataatgttttgtcacgtgtctttcatccataacctaaatgtattaaatg |
248 |
Q |
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| T |
23425 |
taaatgtcaacacttaaataatgttttgcaatgtgtctttcatccataacttaaatgaattaaatg |
23490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 20082648 - 20082681
Alignment:
| Q |
206 |
ttttgtcacgtgtctttcatccataacctaaatg |
239 |
Q |
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| T |
20082648 |
ttttgccacgtgtctttcatccataacctaaatg |
20082681 |
T |
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