View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4430_high_3 (Length: 509)
Name: NF4430_high_3
Description: NF4430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4430_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 7e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 3545464 - 3545628
Alignment:
| Q |
15 |
atcaaaataccacttggtaactttagcaaatttgaatcattggatgaaaatataacgattaacatttcaaatttgtggaggaaaaatatgagtcgtttaa |
114 |
Q |
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| T |
3545464 |
atcaaaataccacttggtaactttagcaaatttgaatcattggatgaaaatataacgactaacatttcaaatttgtggaggaaaaatatgagtcgtttaa |
3545563 |
T |
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| Q |
115 |
tcttcatctggtttcacattgtagacaataataattgtcattttttacaataatatgcaccaatc |
179 |
Q |
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| T |
3545564 |
tcttcatctggtttcacattgtagacaataatgattgtcattttttacaataatatgtaccaatc |
3545628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 377 - 485
Target Start/End: Original strand, 3545871 - 3545979
Alignment:
| Q |
377 |
tatacgagatatccccacaaagatgcacattacaacactattgttgaatggttattgaatacaagttacaacttataacaccattctttactgaaaaaca |
476 |
Q |
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| T |
3545871 |
tatacgagatatccccacatagatgcacattacaacactattgttgaatggttattgaatacaagttacaacttatatcaccattctttactgaaaaaca |
3545970 |
T |
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| Q |
477 |
taatctaac |
485 |
Q |
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||||||||| |
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| T |
3545971 |
taatctaac |
3545979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 297 - 378
Target Start/End: Original strand, 3545755 - 3545836
Alignment:
| Q |
297 |
aaccaagtaaccaacatcaaattttgatgcacattacaagtaaccaaggtgcgagaatctttcttattgaaacattaactta |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3545755 |
aaccaagtaaccaacatcaaattttgatgcacattacaagtaaccaaggtgtgagaatctttcttattgaaacattaactta |
3545836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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