View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4430_low_10 (Length: 259)
Name: NF4430_low_10
Description: NF4430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4430_low_10 |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 13716037 - 13715796
Alignment:
| Q |
1 |
aacatagggaatgtggagaatgttctcttttggaaggacatgtggcccggtgagccattggtgcagtctctaagcattcctactcatttgcatgcttagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13716037 |
aacatagggaatgtggagaatgttctcttttggaagcacatgtggcccggtgagccattggtgaagtctctaagcattcctactcatttgcatgcttagc |
13715938 |
T |
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| Q |
101 |
tgaacatgaaggtgtcatattacattgtgcaccaacaatggcagattccctcatacattagccgtaaatatcctactttgacggtgctgatacaaaatac |
200 |
Q |
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| T |
13715937 |
tgaacatgaaggtgtcatattacatcgtgcaccaacaatggcagattccctcatacattagccctaaatatcctactttgacggtgctgatacaaaatac |
13715838 |
T |
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| Q |
201 |
gactctttgcattgaacctcaaaatgactgtttgcattggct |
242 |
Q |
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| T |
13715837 |
cactctttgcattgaacctcaaaatgactgtttgcattggct |
13715796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 7 - 207
Target Start/End: Complemental strand, 36299 - 36099
Alignment:
| Q |
7 |
gggaatgtggagaatgttctcttttggaaggacatgtggcccggtgagccattggtgcagtctctaagcattcctactcatttgcatgcttagctgaaca |
106 |
Q |
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||||||| |||||||||||||||||||||||||| |||| |||||||| |||||||||||||| ||||||||| | ||||| |||||| ||||| ||| |
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| T |
36299 |
gggaatggggagaatgttctcttttggaaggacaggtggttgggtgagccgttggtgcagtctctcagcattccttcacattttcatgctcagctggaca |
36200 |
T |
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| Q |
107 |
tgaaggtgtcatattacattgtgcaccaacaatggcagattccctcatacattagccgtaaatatcctactttgacggtgctgatacaaaatacgactct |
206 |
Q |
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||||||||||| |||||||| ||||||| ||||||| ||||||| | |||||||| |||||||||||| |||||||| | |||||||||||| ||||| |
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| T |
36199 |
tgaaggtgtcagattacattctgcaccatcaatggcggattcccacctacattagttctaaatatcctaccttgacggttcagatacaaaataccactct |
36100 |
T |
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| Q |
207 |
t |
207 |
Q |
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| |
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| T |
36099 |
t |
36099 |
T |
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