View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4430_low_12 (Length: 238)
Name: NF4430_low_12
Description: NF4430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4430_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 30653643 - 30653423
Alignment:
| Q |
1 |
tattagattgtttaaagctcattattttcctaacaatgattttataggttc-aagattgggaattaactagacctatgtgtggaaaagcattttcaccgc |
99 |
Q |
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| T |
30653643 |
tattagattttttaaagctcattattatcctaacaatgattttataggttctaagattgggaattaactagacctatgtttggaaaagcattttcaccgc |
30653544 |
T |
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| Q |
100 |
nnnnnnnnnnnnnnnnnnnnggtgcaagataggtacatgtaccaatattctgttgtttggtacgccttggcttgcaaatggaatgttccttgcagattat |
199 |
Q |
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| T |
30653543 |
aaaaaaagttgtgaaaaaa-ggtgcaagatatgtacatgtaccaatattctgttgtttggtgcgccttggcttgcaaatggaatgttccttgcatattat |
30653445 |
T |
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| Q |
200 |
aatcccatatttgcgcctttag |
221 |
Q |
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| T |
30653444 |
aatcccatatttgtgcctttag |
30653423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 51085091 - 51084996
Alignment:
| Q |
4 |
tagattgtttaaagctcattattttcctaacaatgattttataggttcaagattgggaattaactagacctatgtgtggaaaagcattttcaccgc |
99 |
Q |
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| T |
51085091 |
tagattatttaaagctcgatattttccgaacaatgattttttagggtcaaggttgggaagtaatcctagttatgtgtggagaagcatttttaccgc |
51084996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 36472944 - 36472995
Alignment:
| Q |
8 |
ttgtttaaagctcattattttcctaacaatgattttataggttcaagattgg |
59 |
Q |
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| T |
36472944 |
ttgtttaaagctcgttatttttctaacattgattttataggtcaaagattgg |
36472995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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