View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4430_low_16 (Length: 230)

Name: NF4430_low_16
Description: NF4430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4430_low_16
NF4430_low_16
[»] chr4 (6 HSPs)
chr4 (1-134)||(9058161-9058294)
chr4 (160-215)||(9058322-9058377)
chr4 (21-134)||(48293355-48293468)
chr4 (77-134)||(3349859-3349916)
chr4 (99-134)||(5122327-5122362)
chr4 (52-134)||(32223260-32223341)
[»] chr8 (1 HSPs)
chr8 (27-134)||(29914539-29914647)
[»] chr3 (1 HSPs)
chr3 (21-134)||(21238061-21238175)
[»] chr2 (3 HSPs)
chr2 (22-134)||(1331030-1331143)
chr2 (79-134)||(6946495-6946548)
chr2 (86-134)||(17762832-17762880)
[»] chr7 (2 HSPs)
chr7 (53-127)||(46147272-46147347)
chr7 (77-134)||(29628184-29628240)
[»] chr5 (2 HSPs)
chr5 (15-134)||(733972-734092)
chr5 (52-134)||(27571985-27572067)
[»] chr1 (3 HSPs)
chr1 (52-134)||(35992545-35992628)
chr1 (84-134)||(35980222-35980272)
chr1 (78-134)||(32910313-32910369)
[»] chr6 (2 HSPs)
chr6 (77-134)||(14564514-14564571)
chr6 (53-126)||(28610674-28610747)


Alignment Details
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 9058161 - 9058294
Alignment:
Q  1 caaggtagtaaattatgtgatttggtttggttaagttgacgttttaaataaaaaccaaaccaaactatgcggtgtaggttggttcggttgttgcgatgtt 100  Q
    |||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9058161 caagatagaaaagtatgtgatttggtttggttaagttgacgttttaaataaaaaccaaaccaaactatgcggtgtaggttggttcggttgttgcgatttt 9058260  T
Q  101 ttgcgagacaatacaattttttgtttctaacatt 134  Q
    || ||||| |||||||||||||||||||||||||    
T  9058261 ttacgagagaatacaattttttgtttctaacatt 9058294  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 9058322 - 9058377
Alignment:
Q  160 caacttaattttcagtcgttttcaacaatgttttaagataatccaacattgcaatt 215  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9058322 caacttaattttcagtcgttttcaacaatgtttcaagataatccaacattgcaatt 9058377  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 48293468 - 48293355
Alignment:
Q  21 tttggtttggttaagttgacgttttaaataaaaaccaaaccaaacta-tgcggtgtaggttggttcggttgttgcgatgttttgcgagacaatacaattt 119  Q
    ||||||||||||  |||| | ||| |||||||| || |||||||| | |||||| | |||||| ||||||| || | | |||| ||||||||||||||||    
T  48293468 tttggtttggttcggttgtcttttaaaataaaatccgaaccaaaccaatgcggtttgggttggatcggttggtgaggtttttt-cgagacaatacaattt 48293370  T
Q  120 tttgtttctaacatt 134  Q
    |||||||| ||||||    
T  48293369 tttgtttccaacatt 48293355  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 3349916 - 3349859
Alignment:
Q  77 ggttggttcggttgttgcgatgttttgcgagacaatacaattttttgtttctaacatt 134  Q
    |||||||||||||||||  || |||||||||||||||| ||||||||| || ||||||    
T  3349916 ggttggttcggttgttgaaattttttgcgagacaatactattttttgtgtccaacatt 3349859  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 134
Target Start/End: Complemental strand, 5122362 - 5122327
Alignment:
Q  99 ttttgcgagacaatacaattttttgtttctaacatt 134  Q
    |||| |||||||||||||||||||||||||||||||    
T  5122362 tttttcgagacaatacaattttttgtttctaacatt 5122327  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 32223341 - 32223260
Alignment:
Q  52 aaaccaaaccaaacta-tgcggtgtaggttggttcggttgttgcgatgttttgcgagacaatacaattttttgtttctaacatt 134  Q
    |||||||||||||| | |||||| | |||| | ||||||| |||| | |||||  |||||||||||||||||||||| ||||||    
T  32223341 aaaccaaaccaaacaaatgcggtttgggttagatcggttgatgcggttttttg--agacaatacaattttttgtttccaacatt 32223260  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 134
Target Start/End: Complemental strand, 29914647 - 29914539
Alignment:
Q  27 ttggttaagttgacgttttaaataaaaaccaaaccaaa-ctatgcggtgtaggttggttcggttgttgcgatgttttgcgagacaatacaattttttgtt 125  Q
    |||||| | ||||| ||| |||| ||||||||| |||| | |||| || |||| ||||||| |||||||||| ||||| |||||||||||||||||||||    
T  29914647 ttggtttatttgacttttaaaatgaaaaccaaatcaaatcaatgcagtttagggtggttcgattgttgcgattttttgtgagacaatacaattttttgtt 29914548  T
Q  126 tctaacatt 134  Q
    |||||||||    
T  29914547 tctaacatt 29914539  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 21238061 - 21238175
Alignment:
Q  21 tttggtttggttaagttgacgttttaaataaaaaccaaaccaaa-ctatgcggtgtaggttggttcggttgttgcgatgttttgcgagacaatacaattt 119  Q
    |||||||||||| | ||||| ||| |||| ||||||||| |||| | ||||||| |||  ||||||| |||||||| | ||||| ||||||||| |||||    
T  21238061 tttggtttggtttatttgacttttaaaatgaaaaccaaatcaaatcaatgcggtttagagtggttcgattgttgcggttttttgtgagacaatataattt 21238160  T
Q  120 tttgtttctaacatt 134  Q
    |||||||||||||||    
T  21238161 tttgtttctaacatt 21238175  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 1331030 - 1331143
Alignment:
Q  22 ttggtttggttaagttgacgttttaaataaaaaccaaaccaaacta-tgcggtgtaggttggttcggttgttgcgatgttttgcgagacaatacaatttt 120  Q
    |||||||||||  |||||| ||| |||||||| ||||||||||| | || ||| | |||||| || |||| |||| | |||| |||||||||||||||||    
T  1331030 ttggtttggttcggttgacttttaaaataaaatccaaaccaaaccaatgtggtttgggttggatcagttggtgcggtttttttcgagacaatacaatttt 1331129  T
Q  121 ttgtttctaacatt 134  Q
    ||||||| ||||||    
T  1331130 ttgtttccaacatt 1331143  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 6946548 - 6946495
Alignment:
Q  79 ttggttcggttgttgcgatgttttgcgagacaatacaattttttgtttctaacatt 134  Q
    |||||||||||| || ||| |||  |||||||||||||||||||||||| ||||||    
T  6946548 ttggttcggttggtgagattttt--cgagacaatacaattttttgtttccaacatt 6946495  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 17762832 - 17762880
Alignment:
Q  86 ggttgttgcgatgttttgcgagacaatacaattttttgtttctaacatt 134  Q
    ||||| |||| | |||| |||||||||||||||||||||||| ||||||    
T  17762832 ggttggtgcggtttttttcgagacaatacaattttttgtttccaacatt 17762880  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 46147272 - 46147347
Alignment:
Q  53 aaccaaaccaaacta-tgcggtgtaggttggttcggttgttgcgatgttttgcgagacaatacaattttttgtttc 127  Q
    ||||||||||||| | |||||| || ||||| ||||||| |||||| |||| ||||||||||||||||||||||||    
T  46147272 aaccaaaccaaaccaatgcggtttacgttggatcggttggtgcgatttttttcgagacaatacaattttttgtttc 46147347  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 29628184 - 29628240
Alignment:
Q  77 ggttggttcggttgttgcgatgttttgcgagacaatacaattttttgtttctaacatt 134  Q
    |||||| ||||||| |||||| |||| |||||||||||||||||||||||| ||||||    
T  29628184 ggttggatcggttggtgcgatttttt-cgagacaatacaattttttgtttccaacatt 29628240  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 734092 - 733972
Alignment:
Q  15 atgtgatttggtttggttaagttgacgttttaaataaaaaccaaaccaaact-atgcggtgtaggttggttcggttgttgcgatgttttgcgagacaata 113  Q
    ||||| ||||||||| ||  |||| | |||||||| |||| ||||||||||  ||| ||| |  || ||||||||||||| | | |||||||||||||||    
T  734092 atgtggtttggtttgattcggttggccttttaaattaaaatcaaaccaaaccgatgtggttttagtaggttcggttgttgaggttttttgcgagacaata 733993  T
Q  114 caattttttgtttctaacatt 134  Q
    ||| |||||||||| ||||||    
T  733992 caactttttgtttccaacatt 733972  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 27572067 - 27571985
Alignment:
Q  52 aaaccaaaccaaacta-tgcggtgtaggttggttcggttgttgcgatgttttgcgagacaatacaattttttgtttctaacatt 134  Q
    |||||||||||||| | |||||| | |||||| ||||||| |||| | |||| |||||||||||||||||||||||| ||||||    
T  27572067 aaaccaaaccaaaccaatgcggtttgggttggatcggttggtgcggtttttt-cgagacaatacaattttttgtttccaacatt 27571985  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 35992628 - 35992545
Alignment:
Q  52 aaaccaaaccaaacta-tgcggtgtaggttggttcggttgttgcgatgttttgcgagacaatacaattttttgtttctaacatt 134  Q
    |||||||||||||||| |||||| | | |||| ||||||| |||| | |||| |||||||||||||||||||| ||| ||||||    
T  35992628 aaaccaaaccaaactaatgcggtttggtttggatcggttggtgcggtttttttcgagacaatacaattttttgcttccaacatt 35992545  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 35980272 - 35980222
Alignment:
Q  84 tcggttgttgcgatgttttgcgagacaatacaattttttgtttctaacatt 134  Q
    ||||||| |||| | |||| |||||||||||||||||||||||| ||||||    
T  35980272 tcggttggtgcggtttttttcgagacaatacaattttttgtttccaacatt 35980222  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 32910369 - 32910313
Alignment:
Q  78 gttggttcggttgttgcgatgttttgcgagacaatacaattttttgtttctaacatt 134  Q
    ||||| ||||||| || ||| |||| |||||| ||||||||||||||||| ||||||    
T  32910369 gttggatcggttggtgtgatttttttcgagacgatacaattttttgtttccaacatt 32910313  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 14564514 - 14564571
Alignment:
Q  77 ggttggttcggttgttgcgatgttttgcgagacaatacaattttttgtttctaacatt 134  Q
    |||||| |||||||||||| | |||| | |||||||||||||||||||||| ||||||    
T  14564514 ggttggatcggttgttgcggttttttactagacaatacaattttttgtttcgaacatt 14564571  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 28610674 - 28610747
Alignment:
Q  53 aaccaaaccaaacta-tgcggtgtaggttggttcggttgttgcgatgttttgcgagacaatacaattttttgttt 126  Q
    ||||||||||||||| |||||| | | ||||||||||||||||  | |||| | |||||||||||||||||||||    
T  28610674 aaccaaaccaaactaatgcggtttggattggttcggttgttgcagtttttt-caagacaatacaattttttgttt 28610747  T

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