View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4430_low_17 (Length: 202)

Name: NF4430_low_17
Description: NF4430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4430_low_17
NF4430_low_17
[»] chr7 (2 HSPs)
chr7 (1-169)||(40506984-40507155)
chr7 (158-202)||(41890529-41890573)
[»] chr4 (6 HSPs)
chr4 (155-200)||(49768896-49768941)
chr4 (156-200)||(44250254-44250298)
chr4 (155-202)||(48722068-48722115)
chr4 (156-202)||(4489823-4489869)
chr4 (154-195)||(21172278-21172319)
chr4 (152-200)||(47998590-47998638)
[»] chr1 (5 HSPs)
chr1 (155-200)||(7203871-7203916)
chr1 (154-202)||(49906487-49906535)
chr1 (155-202)||(43196114-43196161)
chr1 (152-200)||(39669802-39669850)
chr1 (154-202)||(46003466-46003514)
[»] chr8 (6 HSPs)
chr8 (155-202)||(43587640-43587687)
chr8 (156-202)||(10184151-10184197)
chr8 (154-200)||(38504168-38504214)
chr8 (155-200)||(24116039-24116084)
chr8 (154-202)||(9048341-9048389)
chr8 (156-200)||(11114696-11114740)
[»] chr2 (1 HSPs)
chr2 (157-200)||(7281597-7281640)
[»] chr3 (2 HSPs)
chr3 (155-200)||(39604273-39604318)
chr3 (156-200)||(30805630-30805674)
[»] chr5 (1 HSPs)
chr5 (152-200)||(41192583-41192631)


Alignment Details
Target: chr7 (Bit Score: 126; Significance: 3e-65; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 40506984 - 40507155
Alignment:
Q  1 caaggtcaacaatacgatcccacgaatgat---aattaacaatttttagaattttaaaccctccaaacaattttgaaaattttagtatagttaaggtgtg 97  Q
    ||||||||||||||||||||| |||||| |   | |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40506984 caaggtcaacaatacgatcccgcgaatgttttaatttaacaatttgtagaattttaaacccttcaaacaattttgaaaattttagtatagttaaggtgtg 40507083  T
Q  98 tttggtcaaattaagttattggctagctgaaaaactcttttataactgttcaagtttagagaaatgatattt 169  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||    
T  40507084 tttggtcaaattaagttattggccagctgaaaaactcttttataactgttcaagcttatagaaatgatattt 40507155  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 41890529 - 41890573
Alignment:
Q  158 gaaatgatatttatatatccattttgcaacaattttttgacaatt 202  Q
    |||||||||||| || ||| |||||||||||||||||||||||||    
T  41890529 gaaatgatatttgtacatcaattttgcaacaattttttgacaatt 41890573  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 49768941 - 49768896
Alignment:
Q  155 agagaaatgatatttatatatccattttgcaacaattttttgacaa 200  Q
    ||||||||||||||| || |||||||||||||||||||||||||||    
T  49768941 agagaaatgatatttgtacatccattttgcaacaattttttgacaa 49768896  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 44250298 - 44250254
Alignment:
Q  156 gagaaatgatatttatatatccattttgcaacaattttttgacaa 200  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||    
T  44250298 gagaaatgatatttgtatatccattttgtaacaattttttgacaa 44250254  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 48722068 - 48722115
Alignment:
Q  155 agagaaatgatatttatatatccattttgcaacaattttttgacaatt 202  Q
    ||||||||||||||| || |||||||||||||||| ||||||||||||    
T  48722068 agagaaatgatatttgtacatccattttgcaacaactttttgacaatt 48722115  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 4489869 - 4489823
Alignment:
Q  156 gagaaatgatatttatatatccattttgcaacaattttttgacaatt 202  Q
    |||||||||||||| |||| |||||||  ||||||||||||||||||    
T  4489869 gagaaatgatatttgtataaccattttctaacaattttttgacaatt 4489823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 21172278 - 21172319
Alignment:
Q  154 tagagaaatgatatttatatatccattttgcaacaatttttt 195  Q
    ||||||||||||||||| ||||||||||||  ||||||||||    
T  21172278 tagagaaatgatatttaaatatccattttgtgacaatttttt 21172319  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 47998590 - 47998638
Alignment:
Q  152 tttagagaaatgatatttatatatccattttgcaacaattttttgacaa 200  Q
    |||||||||||||||||| || | |||||||| ||||| ||||||||||    
T  47998590 tttagagaaatgatatttgtacaaccattttgtaacaactttttgacaa 47998638  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 7203916 - 7203871
Alignment:
Q  155 agagaaatgatatttatatatccattttgcaacaattttttgacaa 200  Q
    ||||||||||||||| |||| ||||||||||||||||||| |||||    
T  7203916 agagaaatgatatttgtataaccattttgcaacaatttttagacaa 7203871  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 49906487 - 49906535
Alignment:
Q  154 tagagaaatgatatttatatatccattttgcaacaattttttgacaatt 202  Q
    |||| ||||||||||| || || ||||||||||||||||||||||||||    
T  49906487 tagaaaaatgatatttgtacattcattttgcaacaattttttgacaatt 49906535  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 43196161 - 43196114
Alignment:
Q  155 agagaaatgatatttatatatccattttgcaacaattttttgacaatt 202  Q
    ||||||||||||||| || ||||||||||| |||| ||||||||||||    
T  43196161 agagaaatgatatttgtacatccattttgctacaactttttgacaatt 43196114  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 39669802 - 39669850
Alignment:
Q  152 tttagagaaatgatatttatatatccattttgcaacaattttttgacaa 200  Q
    |||||||||||||||||| || | ||||||||  |||||||||||||||    
T  39669802 tttagagaaatgatatttgtacaaccattttgtgacaattttttgacaa 39669850  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 46003466 - 46003514
Alignment:
Q  154 tagagaaatgatatttatatatccattttgcaacaattttttgacaatt 202  Q
    |||||||||||||| | |||||||||||||  |||||||||| ||||||    
T  46003466 tagagaaatgatatatgtatatccattttgtgacaattttttaacaatt 46003514  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 43587640 - 43587687
Alignment:
Q  155 agagaaatgatatttatatatccattttgcaacaattttttgacaatt 202  Q
    ||||||||||||||| |||| ||||||||| |||| ||||||||||||    
T  43587640 agagaaatgatatttgtataaccattttgctacaactttttgacaatt 43587687  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 10184197 - 10184151
Alignment:
Q  156 gagaaatgatatttatatatccattttgcaacaattttttgacaatt 202  Q
    |||||||||||||| |||||| ||||||||| |||||||||| ||||    
T  10184197 gagaaatgatatttgtatatctattttgcaataattttttgataatt 10184151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 38504168 - 38504214
Alignment:
Q  154 tagagaaatgatatttatatatccattttgcaacaattttttgacaa 200  Q
    |||||||||||||||| || | ||||||||| |||||||||||||||    
T  38504168 tagagaaatgatatttgtacaaccattttgctacaattttttgacaa 38504214  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 24116039 - 24116084
Alignment:
Q  155 agagaaatgatatttatatatccattttgcaacaattttttgacaa 200  Q
    |||||||| |||||| || || ||||||||||||||||||||||||    
T  24116039 agagaaattatatttgtacattcattttgcaacaattttttgacaa 24116084  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 9048389 - 9048341
Alignment:
Q  154 tagagaaatgatatttatatatccattttgcaacaattttttgacaatt 202  Q
    |||||||||||||||| |||| |||||||  ||||| ||||||||||||    
T  9048389 tagagaaatgatatttgtataaccattttctaacaactttttgacaatt 9048341  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 11114740 - 11114696
Alignment:
Q  156 gagaaatgatatttatatatccattttgcaacaattttttgacaa 200  Q
    |||||||||||||| || ||||||||||||| || ||||||||||    
T  11114740 gagaaatgatatttgtacatccattttgcaataactttttgacaa 11114696  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 7281640 - 7281597
Alignment:
Q  157 agaaatgatatttatatatccattttgcaacaattttttgacaa 200  Q
    |||||||||||||||||| | |||||||||||| ||||||||||    
T  7281640 agaaatgatatttatataacaattttgcaacaactttttgacaa 7281597  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 39604318 - 39604273
Alignment:
Q  155 agagaaatgatatttatatatccattttgcaacaattttttgacaa 200  Q
    ||||||||||||||| || | ||||||| |||||||||||||||||    
T  39604318 agagaaatgatatttgtacaaccatttttcaacaattttttgacaa 39604273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 30805674 - 30805630
Alignment:
Q  156 gagaaatgatatttatatatccattttgcaacaattttttgacaa 200  Q
    |||||||||||||| ||  ||||||||||||||| ||||||||||    
T  30805674 gagaaatgatatttgtacctccattttgcaacaactttttgacaa 30805630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 41192583 - 41192631
Alignment:
Q  152 tttagagaaatgatatttatatatccattttgcaacaattttttgacaa 200  Q
    |||||||||||||||||| || | | ||||||| |||||||||||||||    
T  41192583 tttagagaaatgatatttgtacaactattttgctacaattttttgacaa 41192631  T

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