View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4430_low_5 (Length: 436)
Name: NF4430_low_5
Description: NF4430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4430_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 33028628 - 33029062
Alignment:
| Q |
1 |
cttgaaagatattgttgtgatgcaaagaggggagatgtgatgttagttctgtttaataa---gtcatgtataccttttgtatcatgtatacttattaaac |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33028628 |
cttgaaagatattgttgtgatgcaaagaggggagatgtgatgttagttctgtttaataataagtcatgtataccttttgtatcatgtatacttattaaac |
33028727 |
T |
|
| Q |
98 |
taaataataagtcatttaacggtttccattttatgtttcaacttctgcatttcccgtttgcactttatcctccaaatctgattgtataaggatac----- |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33028728 |
taaataataagtcatttaacggtttccattttatgtttcaacttctgcatttcccgtttgcactttatcctccaaatctgattgtataaggatacatcat |
33028827 |
T |
|
| Q |
193 |
--atcagttatgtttccattagcaaatgtctactataggaactacttcatttcttctgatggttttccaaactaaaccaacctccctttcctgataagta |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
33028828 |
acatcagttatgtttccattagcaaatgtctactataggaactgcttcatttcttctgatggttttccaaagtaaaccaagctccctttcctgataagta |
33028927 |
T |
|
| Q |
291 |
ttgttctaacagaagcatataatcaaaaagctgaaaaatggtttgaaaaatttgaagaacccaagtcacaattctgtccctttatttggtttcctattct |
390 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33028928 |
ttgttctaacagaagcatagaatcaaaaagctgaaaaatggtttgaaaaatttgaagaacccaagtcacaattctgtccctttatttggtttcctattct |
33029027 |
T |
|
| Q |
391 |
gatagaaggttgctttactcgatcaatccctctct |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
33029028 |
gatagaaggttgctttactcgatcaatccctctct |
33029062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 33040090 - 33040146
Alignment:
| Q |
1 |
cttgaaagatattgttgtgatgcaaagaggggagatgtgatgttagttctgtttaat |
57 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33040090 |
cttgaaagatattgttgtgatgcaaagaggggagatgtgatgttagtcctgtttaat |
33040146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 215
Target Start/End: Complemental strand, 24127362 - 24127269
Alignment:
| Q |
120 |
tttccattttatgtttcaacttctgcatttcccgtttgcactttatcctccaaatctgattgtataaggatacatcagttatgtttccattagcaa |
215 |
Q |
| |
|
||||||| |||||||||||| |||||||||| ||||||||||||||||||| || ||| ||| | || |||||| |||| ||||||||||||| |
|
|
| T |
24127362 |
tttccatgatatgtttcaactgctgcatttccaatttgcactttatcctccaactccgatggtaca--gaaacatcatttatatttccattagcaa |
24127269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University