View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4430_low_6 (Length: 384)
Name: NF4430_low_6
Description: NF4430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4430_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 36 - 366
Target Start/End: Complemental strand, 22448574 - 22448259
Alignment:
| Q |
36 |
ttttatttagaagaaactatgaagtaatgaaggtgtttaggaatttttgggattttaggagagtagtttttctaggaactagtgtaattagggtctttag |
135 |
Q |
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| T |
22448574 |
ttttatttagaagaaactaggaagtaatgaaggtgtttaggaatttttgggattttaggagagtagtttttctaggaactagtgtaattagggtctttag |
22448475 |
T |
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| Q |
136 |
catgtagcaaacactaaaagttacttgctactaaatgaa----aagaaaagacaaattagaagtctaacgtatttgatcttaattttatactaaatacat |
231 |
Q |
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| T |
22448474 |
catgtagcaaacactaaaagttatttgctactaaatgaaatataagaaaaaacaaattagaagtctaacgtaattgatcttaattttatactaaatacat |
22448375 |
T |
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| Q |
232 |
tttactttttaaattgtttttagggaatagaagttaattactgttataatcgatgttttaaaaaattagattagatcaacccggtaagatatatgaatta |
331 |
Q |
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| T |
22448374 |
tttactttttaaattgctt------------------ttactgttataatcaatatttt-aaaaattagattagatcaacccggtaagatatatgaatta |
22448294 |
T |
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| Q |
332 |
tggtttatttgattcattaagttcaaccatgaacc |
366 |
Q |
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| T |
22448293 |
tggtttatttgattcattaagttcaaccatgaacc |
22448259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 36728105 - 36728137
Alignment:
| Q |
210 |
cttaattttatactaaatacattttacttttta |
242 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
36728105 |
cttaattttagactaaatacattttacttttta |
36728137 |
T |
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