View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4430_low_7 (Length: 342)
Name: NF4430_low_7
Description: NF4430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4430_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 34510294 - 34510616
Alignment:
| Q |
1 |
gaaaattactgattagcagttaaatcatgaaattaacaacaaaaatgatgaatcaaaatttgcaatgaaacacatagaattgaatcatgagaagcaaatg |
100 |
Q |
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| T |
34510294 |
gaaaattactgattagcagttaaatcatgaaattaacaacaaaaatgatgaatcaaaatttgcaatgaaacacatagaattgaatcatgagaagcaaatg |
34510393 |
T |
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| Q |
101 |
atagaaagattgaaattaccagccatggagacgcttgtggagattgatggtatactcccgtgtaaccacctcttctttcctacctgctgcacccttctcc |
200 |
Q |
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| T |
34510394 |
atagaaagattgaaattaccagccatggagacgcttgtggagattgatggtatactcccgtgtaaccacctcttctttcctacctgctgcacccttctca |
34510493 |
T |
|
| Q |
201 |
accattttcagcttctgagattaacctaaaccctaataaaaaaccgaaaaattcaaatttataatcaaaagctacgaaatttattatgatgatgcgttga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34510494 |
accattttcagcttctgagattaacctaaaccctaataaaaaaccgaaaaattcaaatttataatcaaaagctacgaaatttattattatgatgcgttga |
34510593 |
T |
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| Q |
301 |
tgtttgaattaaatacttcaatt |
323 |
Q |
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||||||||||||||||||||||| |
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| T |
34510594 |
tgtttgaattaaatacttcaatt |
34510616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 210
Target Start/End: Complemental strand, 42863539 - 42863443
Alignment:
| Q |
114 |
aattaccagccatggagacgcttgtggagattgatggtatactcccgtgtaaccacctcttctttcctacctgctgcacccttctccaccattttca |
210 |
Q |
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||||||||||||||||| || |||||||| |||||||| ||||| | || || |||||||| |||||||| || | ||||||||||||||||| |
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| T |
42863539 |
aattaccagccatggaggcgtttgtggaggttgatggtgtactctctggttacaacctcttccttcctaccggcgccggtcttctccaccattttca |
42863443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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