View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4430_low_8 (Length: 337)

Name: NF4430_low_8
Description: NF4430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4430_low_8
NF4430_low_8
[»] chr3 (8 HSPs)
chr3 (18-332)||(476095-476409)
chr3 (18-321)||(481007-481316)
chr3 (18-132)||(778115-778229)
chr3 (19-66)||(1186288-1186335)
chr3 (19-66)||(1204352-1204399)
chr3 (19-66)||(1304691-1304738)
chr3 (18-251)||(5360828-5361060)
chr3 (18-79)||(7118820-7118881)
[»] chr4 (2 HSPs)
chr4 (18-132)||(52186883-52186998)
chr4 (201-234)||(52187067-52187100)
[»] scaffold0438 (1 HSPs)
scaffold0438 (18-60)||(5373-5415)
[»] chr2 (4 HSPs)
chr2 (18-84)||(43864014-43864081)
chr2 (18-84)||(43867506-43867572)
chr2 (18-128)||(38989170-38989280)
chr2 (18-60)||(43875206-43875248)
[»] chr5 (1 HSPs)
chr5 (18-60)||(33958064-33958106)
[»] chr7 (1 HSPs)
chr7 (18-74)||(6889202-6889258)


Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 476095 - 476409
Alignment:
Q  18 caaaagatggatcaatctctggaagactcttcccacccttacactaagttcttcaaactttaggacctgcacaagtttcgatcaatttctgtctcagatt 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  476095 caaaagatggatcaatctctggaatactcttcccacccttacactaagttcttcaaactttaggacctgcacaagtttcgatcaatttctgtctcagatt 476194  T
Q  118 ttctctcttcgtgatcactcaagtgctatcagttctctctgtttgcacaacaatcattttatggggattagactatacaaaaagatcatagaatacactt 217  Q
    |||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  476195 ttctctcttcgtgatcactcaagtgctatccgtgctctctgtttgcactacaatcattttatggggattagactatacaaaaagatcatagaatacactt 476294  T
Q  218 tttcacacaatgtccaatgctttcgaatcaattataataatattcaacaccatccaccatgcttcttttcatctcatactttaacctcccttcatctttc 317  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  476295 tttcacacaatgtccaacgctttcgaatcaattataatagtattcaacaccttccaccatgcttcttttcatctcatactttaacctcccttcatctttc 476394  T
Q  318 tagttgttctgtgtt 332  Q
    ||||| |||| ||||    
T  476395 tagttattctttgtt 476409  T

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Target: chr3; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 481007 - 481316
Alignment:
Q  18 caaaagatggatcaatctctggaagactcttcccacccttacactaagttcttcaaactttaggacctgcacaagtttcgatcaatttctgtctcagatt 117  Q
    |||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||   | |||||| || |||||  ||| ||| |||    
T  481007 caaaagatggatcaatctctggaagactcttcccacgcttaccttaagttcttcaaactttaggacccaaagaagtttggaacaattcgtgtatcatatt 481106  T
Q  118 ttctctcttcgtgatcactcaagtgctatcagttctctctgtttgca------caacaatcattttatggggattagactatacaaaaagatcatagaat 211  Q
    || || ||||| ||||||||||  ||||||  | ||||||| |||||      | |||||||||||||||||||||| ||||||  || ||| |||||||    
T  481107 ttgtcgcttcgagatcactcaacagctatccatactctctgcttgcagttgcactacaatcattttatggggattagcctataccgaatgattatagaat 481206  T
Q  212 acactttttcacacaatgtccaatgctttcgaatcaattataataatattcaacaccatccaccatgcttcttttcatctcatactttaacctcccttca 311  Q
    |  ||||||||||||||||||||   |||||||||| ||||  || |||| || ||| ||||||| ||||||||||||||||||||||||| ||||||||    
T  481207 atgctttttcacacaatgtccaacagtttcgaatcagttatgctattattgaagaccttccaccacgcttcttttcatctcatactttaacgtcccttca 481306  T
Q  312 tctttctagt 321  Q
    ||||||||||    
T  481307 tctttctagt 481316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 778229 - 778115
Alignment:
Q  18 caaaagatggatcaatctctggaagactcttcccacccttacactaagttcttcaaactttaggacctgcacaagtttcgatcaatttctgtctcagatt 117  Q
    |||||||||||||||||||||||| | ||| ||||| |||||| ||||||||||| ||||||| |||| |   ||||| ||  ||||  | |||||||||    
T  778229 caaaagatggatcaatctctggaaaattctacccactcttacattaagttcttcacactttagaacctccgacagttttgaagaattcgtttctcagatt 778130  T
Q  118 ttctctcttcgtgat 132  Q
    || ||||||||||||    
T  778129 ttgtctcttcgtgat 778115  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 1186288 - 1186335
Alignment:
Q  19 aaaagatggatcaatctctggaagactcttcccacccttacactaagt 66  Q
    |||||||||||||||||||||||||||||| |||| |||||| |||||    
T  1186288 aaaagatggatcaatctctggaagactctttccactcttacattaagt 1186335  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 1204352 - 1204399
Alignment:
Q  19 aaaagatggatcaatctctggaagactcttcccacccttacactaagt 66  Q
    |||||||||||||||||||||||||||||| |||| |||||| |||||    
T  1204352 aaaagatggatcaatctctggaagactctttccactcttacattaagt 1204399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 1304738 - 1304691
Alignment:
Q  19 aaaagatggatcaatctctggaagactcttcccacccttacactaagt 66  Q
    |||||||||||||||||||||||||||||| |||| |||||| |||||    
T  1304738 aaaagatggatcaatctctggaagactctttccactcttacattaagt 1304691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 5361060 - 5360828
Alignment:
Q  18 caaaagatggatcaatctctggaagactcttcccacccttacactaagttcttcaaactttaggacctgcacaagtttcgatcaatttctgtctcagatt 117  Q
    ||||||||||| ||||||||||||||||||||| || ||| || ||| || |    | |||||||||  || ||||||| | ||||| || |||||||||    
T  5361060 caaaagatggaccaatctctggaagactcttccaactcttgcattaaattttcggcaatttaggaccaaca-aagtttccaacaattcctttctcagatt 5360962  T
Q  118 ttctctcttcgtgatcactcaagtgctatcagttctctctgtttgcacaacaatcattttatggggattagactatacaaaaagatcatagaatacactt 217  Q
    || |||||| | ||| ||||||  |||||  || ||||| |||||||||  | |  ||  || | | |||| ||||||  ||||||  |||||||| |||    
T  5360961 ttatctcttggcgatgactcaaccgctattcgtgctctccgtttgcacagtagtacttcgatagagcttagcctatacggaaagattctagaatacgctt 5360862  T
Q  218 tttcacacaatgtccaatgctttcgaatcaatta 251  Q
    ||||||||| |||||||  ||||| |||||||||    
T  5360861 tttcacacagtgtccaacactttcaaatcaatta 5360828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 7118820 - 7118881
Alignment:
Q  18 caaaagatggatcaatctctggaagactcttcccacccttacactaagttcttcaaacttta 79  Q
    |||||||||||  ||||| ||||||  |||||||||||||||||||| ||||||| ||||||    
T  7118820 caaaagatggaaaaatctatggaagcatcttcccacccttacactaacttcttcacacttta 7118881  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 52186883 - 52186998
Alignment:
Q  18 caaaagatggatcaatctctggaagactcttcccacccttacactaagttcttcaaactttaggacctg--cacaagtttcgatcaatttctgtctcaga 115  Q
    |||||||||||||| |||||||| || ||||||||| |||||||||||||||||| |||||||| || |   | |||||| ||| ||||| |||||||||    
T  52186883 caaaagatggatcattctctggaggagtcttcccactcttacactaagttcttcatactttaggtccggaaaaaaagttt-gatgaatttgtgtctcaga 52186981  T
Q  116 ttttctctcttcgtgat 132  Q
    || ||||||||||||||    
T  52186982 ttctctctcttcgtgat 52186998  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 52187067 - 52187100
Alignment:
Q  201 gatcatagaatacactttttcacacaatgtccaa 234  Q
    |||||||||||||||| |||||||||||||||||    
T  52187067 gatcatagaatacactgtttcacacaatgtccaa 52187100  T

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Target: scaffold0438 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 5373 - 5415
Alignment:
Q  18 caaaagatggatcaatctctggaagactcttcccacccttaca 60  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  5373 caaaagatggatcaatctctggaagactcttcccactcttaca 5415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 43864081 - 43864014
Alignment:
Q  18 caaaagatggatcaatctctggaagactcttcccaccc-ttacactaagttcttcaaactttaggacc 84  Q
    |||||||||||||||||| ||||||| |||||| ||   ||||| |||||||||||||||||||||||    
T  43864081 caaaagatggatcaatctttggaagagtcttcctactaattacattaagttcttcaaactttaggacc 43864014  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 43867572 - 43867506
Alignment:
Q  18 caaaagatggatcaatctctggaagactcttcccacccttacactaagttcttcaaactttaggacc 84  Q
    |||||||||||||| ||||||||||  |||||| ||  ||||| |||||||||| ||||||||||||    
T  43867572 caaaagatggatcactctctggaagggtcttcctactattacattaagttcttcgaactttaggacc 43867506  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 38989170 - 38989280
Alignment:
Q  18 caaaagatggatcaatctctggaagactcttcccacccttacactaagttcttcaaactttaggacctgcacaagtttcgatcaatttctgtctcagatt 117  Q
    |||||||||||||| ||||||||||| |||| ||||  ||||||| || |||||| ||| |||| || | | ||| || ||| | ||| |||||| ||||    
T  38989170 caaaagatggatcattctctggaagagtctttccactattacacttagatcttcatactctaggcccagaaaaaggtttgatgagtttgtgtctcggatt 38989269  T
Q  118 ttctctcttcg 128  Q
    || ||||||||    
T  38989270 ttttctcttcg 38989280  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 43875248 - 43875206
Alignment:
Q  18 caaaagatggatcaatctctggaagactcttcccacccttaca 60  Q
    |||||||||||||||||| ||||||| ||||||||| ||||||    
T  43875248 caaaagatggatcaatctttggaagagtcttcccactcttaca 43875206  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 33958106 - 33958064
Alignment:
Q  18 caaaagatggatcaatctctggaagactcttcccacccttaca 60  Q
    |||||||||||||||||||||||||||||||| ||| ||||||    
T  33958106 caaaagatggatcaatctctggaagactcttcacactcttaca 33958064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 6889202 - 6889258
Alignment:
Q  18 caaaagatggatcaatctctggaagactcttcccacccttacactaagttcttcaaa 74  Q
    ||||||||||| ||||||||||||   |||||| ||||||| | |||||||||||||    
T  6889202 caaaagatggaacaatctctggaaatatcttcctacccttatattaagttcttcaaa 6889258  T

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