View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4431-Insertion-1 (Length: 593)
Name: NF4431-Insertion-1
Description: NF4431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4431-Insertion-1 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 6 - 593
Target Start/End: Complemental strand, 44865079 - 44864492
Alignment:
| Q |
6 |
catcactaattctccgcaacatgcttattatgtaatgatttatagcaagggaattgcttttataaaacttgagcaaccaacacaatttctgaatgatact |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44865079 |
catcactaattctccgcaacatgcttattatgtaatgatttatagcaagggaattgcttttataaaacttgagcaaccaacacaatttctgaatgatact |
44864980 |
T |
|
| Q |
106 |
gtgattcgcaaaggcagagacaagcgtcgaaacattgaaatcaacttcactaactgcatttatttgctcatcttcagaaaaatcaccagtgtcatccaac |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44864979 |
gtgattcgcaaaggcagagacaagcgtcgaaacattgaaatcaacttcactaactgcatttatttgctcatcttcagaaaaatcaccagtgtcatccaac |
44864880 |
T |
|
| Q |
206 |
atatcctcattaggatgttcaggatttgtgttttccattggtttcataccaacttgggagttcacatcttcctcgacatcttcatttttattatcatcaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44864879 |
atatcctcattaggatgttcaggatttgtgttttccattggtttcataccaacttgggagttcacatcttcctcgacatcttcatttttattatcatcaa |
44864780 |
T |
|
| Q |
306 |
gatttgtatttctcactgattccacaccaatttcagagttcacatctctcttgacattatcatctccattatcatcaagatttctgttttccgttggttc |
405 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44864779 |
gatttgtgtttctcactgattccacaccaatttcaaagttcacatctctcttgacattattatctccattatcatcaagatttctgttttccattggttt |
44864680 |
T |
|
| Q |
406 |
caaacgaacttgggagttcacatctttctcgagattttgatgttcattatcacgaggggtgtcttcttgctcagtggaatttgcatttggtatggattcc |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44864679 |
caaacgaacttgggagttcacatctttctcgagattttgatgttcattatcatgaggggtgtcttcttgctcggtggaatttgcatttggtatggattcc |
44864580 |
T |
|
| Q |
506 |
ttctgcagcaactgattttcagctaattgattgtcaatagaaatgctggcttctttttgaatgcaagactgatctccagttggtttat |
593 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44864579 |
ttctgcagcaactgattttcagctaattgattgtcaatagaaatgctagcttctttttgaatgcaagactgatctccagttggtttat |
44864492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University