View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4431-Insertion-2 (Length: 592)
Name: NF4431-Insertion-2
Description: NF4431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4431-Insertion-2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 392 - 532
Target Start/End: Complemental strand, 19936520 - 19936382
Alignment:
| Q |
392 |
tcaatatagatggtgcaactcgaaacataaagagtttgatagaggggcnnnnnnngcttgacaagaaaacatcataaaggtggaagtataatggtgaata |
491 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
19936520 |
tcaatatagatggtgcaagtcgaaacataaagagtttgacagaggggcaaaaaaagcttgacaagaaa-catcataa-ggtggaagtataatggtgaata |
19936423 |
T |
|
| Q |
492 |
ctcttccttttcctatgtatactaagattgttgaaaatcta |
532 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19936422 |
ctcatccttttcctatgtatactaagattgttgaaaatcta |
19936382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 19936608 - 19936534
Alignment:
| Q |
8 |
tattttttgcatcctcagatttgtttttaacttagaaaatgttttctgaaaaagcaaacataaatcaacccaata |
82 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19936608 |
tattttttgcatcctctgatttgtttttaacttagaaaatgttttctgaaaaagcaaacataaatcaacccaata |
19936534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 458 - 591
Target Start/End: Original strand, 18085621 - 18085754
Alignment:
| Q |
458 |
aaacatcataaaggtggaagtataatggtgaatactcttccttttcctatgtatactaagattgttga-aaatctaaaagctaagagtatatttgattcc |
556 |
Q |
| |
|
||||||||||||| | | ||||| |||||||||| |||||| || |||| ||||||||| |||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
18085621 |
aaacatcataaagtttgtagtatcatggtgaataatcttcccttccctaagtatactaaaattgttgagaaatctact-gctaagagtatatttgattcc |
18085719 |
T |
|
| Q |
557 |
ctctgtttcacatatgagggaaatcaacaagtgaa |
591 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||| |
|
|
| T |
18085720 |
ctctgctccacatatgagggaaatcaacaagtgaa |
18085754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 279 - 364
Target Start/End: Original strand, 18085437 - 18085522
Alignment:
| Q |
279 |
ccccatcttcaaaggagatgccgagcaattttcttggtggaataataaattatatggtcatgtcatagatcttgattaagaactat |
364 |
Q |
| |
|
||||||||||| || ||||| ||||||||| ||||||||| || ||||| ||| ||||||||||| ||||||| ||||||||| |
|
|
| T |
18085437 |
ccccatcttcagtggggatgctaagcaatttttttggtggaaaaacaaattgtatagtcatgtcataactcttgatgaagaactat |
18085522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 29235192 - 29235264
Alignment:
| Q |
292 |
ggagatgccgagcaattttcttggtggaataataaattatatggtcatgtcatagatcttgattaagaactat |
364 |
Q |
| |
|
|||||||| || |||||||||| ||||| || ||||| ||| ||||||||||||||||| || ||||||||| |
|
|
| T |
29235192 |
ggagatgctgaataattttcttgctggaaaaacaaattgtatagtcatgtcatagatctttatgaagaactat |
29235264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 29348491 - 29348563
Alignment:
| Q |
292 |
ggagatgccgagcaattttcttggtggaataataaattatatggtcatgtcatagatcttgattaagaactat |
364 |
Q |
| |
|
|||||||| || |||||||||| ||||| || ||||| ||| ||||||||||||||||| || ||||||||| |
|
|
| T |
29348491 |
ggagatgctgaataattttcttgctggaaaaacaaattgtatagtcatgtcatagatctttatgaagaactat |
29348563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University